View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_79 (Length: 254)
Name: NF17117_low_79
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17860407 - 17860173
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
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| T |
17860407 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
17860308 |
T |
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| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
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| T |
17860307 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
17860208 |
T |
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| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaa |
235 |
Q |
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| T |
17860207 |
tgaccagcaacataattctggtcatccatctgcaa |
17860173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34915405 - 34915639
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
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| T |
34915405 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
34915504 |
T |
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| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
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| T |
34915505 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctatgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
34915604 |
T |
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| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaa |
235 |
Q |
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| T |
34915605 |
tgaccagcaacataattctggtcatccatctgcaa |
34915639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4968938 - 4968704
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4968938 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagttatgtggagtggtgct |
4968839 |
T |
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| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4968838 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctattcaaactgttcaattggtacaaggatgccta |
4968739 |
T |
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| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaa |
235 |
Q |
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|||||| || ||||||||||||||||| ||||||| |
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| T |
4968738 |
tgaccagcaacataattctggtcatccgtctgcaa |
4968704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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