View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_8 (Length: 587)
Name: NF17117_low_8
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 32 - 582
Target Start/End: Complemental strand, 21471306 - 21470756
Alignment:
| Q |
32 |
acttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgtacatgtgtgtagtatttacgttgagaaaagcattatgcttaaaaaat |
131 |
Q |
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| T |
21471306 |
acttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgcacatgtgtgtagtatttacgttgagaaaagcattatgcttaaaaaat |
21471207 |
T |
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| Q |
132 |
ttaagcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctgttctctttcgaagagttcattg |
231 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21471206 |
ttaatcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctgttctctttcgaagagttcattg |
21471107 |
T |
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| Q |
232 |
ccaagtacaccattgacaacattgtttacaggctggtcattgaaggatctgccaatataagtcaatgtcataagatttaaatcacatctaaatttataga |
331 |
Q |
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| T |
21471106 |
ccaagtacaccattgacaacattgtttacaggctggtcattgaaggatctgccaatataagtcaatgtcataagatttaaatcacatctaaatttataga |
21471007 |
T |
|
| Q |
332 |
gacttatatataagtggctatgccatatgcacataattaaattgtttatccaagcattggcaaatataacatttcaagattgatggtagagaatgtatgc |
431 |
Q |
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| T |
21471006 |
gacttatatataagtggctatgccatatgcacataattaaattgtttatccaagcattggcaaatataacatttcaagattgatggtagagaatgtgtgc |
21470907 |
T |
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| Q |
432 |
acatgacatatatgagtagcataccctatatacacccgcgtgacttctggaatattgagcactttcccaagtgaccacattaaagcaccgtaaattctca |
531 |
Q |
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| T |
21470906 |
acatgacatatatgagtagcataccctatatacacccgcgtgacttctggaatattgagcactttcccaagtgaccacattaaagcaccgtaaattctca |
21470807 |
T |
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| Q |
532 |
ttaactgaaacatttgggcacacaattatatataaagttatattcttcgac |
582 |
Q |
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| T |
21470806 |
ttaactgaaacattagggcacacaattatatataaaattatattctccgac |
21470756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 21501435 - 21501126
Alignment:
| Q |
9 |
tgtggttcatcctttactttaaaacttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgtacatgtgtgtagtatttacgttga |
108 |
Q |
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| T |
21501435 |
tgtggttcattctcaactttaaaactgattccacaaatga-tctcttaagaaaatttagctaa----aaaaaatgcacatgtatgtagtatttacgttga |
21501341 |
T |
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| Q |
109 |
gaaaagcattatgcttaaaaaatttaagcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcct |
208 |
Q |
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| T |
21501340 |
gcaaattattatgattaaaaattttaatcaaatgaaaaacttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcct |
21501241 |
T |
|
| Q |
209 |
gttctctttcgaagagttcattgccaagtacaccattgacaacattgtttacaggctggtcattgaaggatctgccaatataagtcaatgtcataagatt |
308 |
Q |
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| T |
21501240 |
gttctctttcaaagagttcatttccgagtacaccaatg------ttgtttacaggctggtcattgaaggatctgccaatataagtcaatgtcacaagatt |
21501147 |
T |
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| Q |
309 |
taaatcacatctaaatttata |
329 |
Q |
| |
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| T |
21501146 |
tggatcacatataaatttata |
21501126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 392 - 567
Target Start/End: Complemental strand, 21500846 - 21500670
Alignment:
| Q |
392 |
caaatataacatttcaagattgatggtagagaatgtatgcacatgacatatatga-gtagcataccctatatacacccgcgtgacttctggaatattgag |
490 |
Q |
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|||| |||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||| |
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| T |
21500846 |
caaagataacatttcaagatttatggtagagaatgtgtgcacatgacatatatgaagtgacataccctatatacacccgcatgatttctggaatattgaa |
21500747 |
T |
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| Q |
491 |
cactttcccaagtgaccacattaaagcaccgtaaattctcattaactgaaacatttgggcacacaattatatataaa |
567 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||| |||||||| |
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| T |
21500746 |
cactttcccaagtgaccacattaaagcaccataaattctcattaactgcaacattagggcacataattttatataaa |
21500670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 40922660 - 40922534
Alignment:
| Q |
157 |
cgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctgttctctttcgaagagttcattgccaagtacaccattgacaacattgt |
256 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| || ||||| || |||| | |||| ||||| ||| | |
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| T |
40922660 |
cgatcacaagccgcctttggtatatctttaagatctgaaagaaggtcttcctgttctttttcaaacagttcctttccaattggaccactgacagcatcat |
40922561 |
T |
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| Q |
257 |
ttacaggctggtcattgaaggatctgc |
283 |
Q |
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||||||||| ||| || ||||| |||| |
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| T |
40922560 |
ttacaggcttgtcgttaaaggagctgc |
40922534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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