View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17117_low_81 (Length: 252)
Name: NF17117_low_81
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_81 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 31205158 - 31205391
Alignment:
| Q |
19 |
agaaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31205158 |
agaaaccgtacccttattttctaaaaactcaaggattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttc |
31205257 |
T |
|
| Q |
119 |
acttgtgggtttcttctccaattcaatgtttgtgggtt-ccccgtcttctctcttctatgtgttgtcaacaatggtagtagtggtgtcactcatgttgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31205258 |
acttgtgggtttcttctccaattcaatgttcatgggttcccccttcttctctcttctatgtgttgtcaacaatggtagtagtggtgtcattcatgttgga |
31205357 |
T |
|
| Q |
218 |
cgct----ttagctgagataccacctttgctact |
247 |
Q |
| |
|
||| ||||||||||||||||||| |||| |
|
|
| T |
31205358 |
tgctcatgaaagctgagataccacctttggtact |
31205391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32399778 - 32399727
Alignment:
| Q |
21 |
aaaccgtacccttattttcta-aaaactcaacgattgttacatgccatgtat |
71 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
32399778 |
aaaccgtacccttattttctaaaaaacccaacaattgttacatgccatgtat |
32399727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 43415712 - 43415531
Alignment:
| Q |
21 |
aaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttcac |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43415712 |
aaaccgtacccttattttctaaaaacccaacgattgttacatgccatgtatgtattctctagcaatttgaaggtgcttcttgaattgatattgatttcac |
43415613 |
T |
|
| Q |
121 |
ttgtg------ggtttcttctccaattcaatgtttgtgggttccccgtcttctctcttctatgtgttgtcaacaatggtagt |
196 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43415612 |
ttttgaatcgttgtttcttctccaattcaatgtttgtgggttccccgtcttctctcttcccagttttgtcgacaatggtagt |
43415531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 8358971 - 8359133
Alignment:
| Q |
19 |
agaaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttc |
118 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
8358971 |
agaaatcgtacccttattttctaaaaatccaacgattgttacatgccatgtatgtattctccaacaatttgaaggtacttcttgaattgatattgatttc |
8359070 |
T |
|
| Q |
119 |
acttgtg------ggtttcttctccaattcaatgtttgtgggtt-ccccgtcttctctcttct |
174 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8359071 |
acttgtgaatcattgtttcttctccaattcaatgtttgtgggttcccccgtcttctctcttct |
8359133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 43704178 - 43704000
Alignment:
| Q |
21 |
aaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttcac |
120 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43704178 |
aaaccgtacccttattttttaaaaaccgaacaattcttacatgccatgcatgtattcgctagcaatttgaaggtgcttcttgaattgatattgatttcac |
43704079 |
T |
|
| Q |
121 |
ttgtg------ggtttcttctccaattcaatgtttgtgggttccccgtcttctctcttctatgtgttgtcaacaatggt |
193 |
Q |
| |
|
|| || |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
43704078 |
ttttgaatcgttgtttcttctccaattcaatgtttgcgggttccctgtcttctctcttccctgtgttgtcgacaatggt |
43704000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University