View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_83 (Length: 250)
Name: NF17117_low_83
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_83 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 17860709 - 17860448
Alignment:
| Q |
11 |
taattctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
110 |
Q |
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| T |
17860709 |
taatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
17860610 |
T |
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| Q |
111 |
tattcatgactaggagaatgttaggtgttttgtcaggtttct----------------------aaggagttttcctcatatcaggaagtgtctttgcac |
188 |
Q |
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| T |
17860609 |
tattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttcctcatctcaggaagtgtctttgcac |
17860510 |
T |
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| Q |
189 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
250 |
Q |
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| T |
17860509 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
17860448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 4969240 - 4968979
Alignment:
| Q |
11 |
taattctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
110 |
Q |
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| T |
4969240 |
taatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
4969141 |
T |
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| Q |
111 |
tattcatgactaggagaatgttaggtgttttgtcaggtttct----------------------aaggagttttcctcatatcaggaagtgtctttgcac |
188 |
Q |
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| T |
4969140 |
tattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttcctcatctcaggaagtgtctttgcac |
4969041 |
T |
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| Q |
189 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
250 |
Q |
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| T |
4969040 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
4968979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 34915103 - 34915364
Alignment:
| Q |
11 |
taattctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
110 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915103 |
taatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagttttttggggaagctggtcctcctag |
34915202 |
T |
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| Q |
111 |
tattcatgactaggagaatgttaggtgttttgtcaggtttct----------------------aaggagttttcctcatatcaggaagtgtctttgcac |
188 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
34915203 |
tattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttcctcatctcagggagtgtctttgcac |
34915302 |
T |
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| Q |
189 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915303 |
aaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaa |
34915364 |
T |
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