View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_89 (Length: 242)
Name: NF17117_low_89
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 23495654 - 23495429
Alignment:
| Q |
4 |
ctgttataatttttagaaaattgtaaaaatgaaaagtcaacgaaaccaacacatgttagtacacaagttacaataagtttggttctaaacatgaaccatg |
103 |
Q |
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| T |
23495654 |
ctgttataatttttagaaaattgtaaaaatgaaaagtcaacgaaaccaacacatgttagtacacaagtgacaataagtttggctctaaacatgaaccatg |
23495555 |
T |
|
| Q |
104 |
tgtatacgtatagttcctaattatagcttgtaatcaagaccagctccatatttccacgcctcaagatgtcttttccactgaaaactcgtcatcgatggaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23495554 |
tgtatacgtatagttcctaattatagcttgtaatcaagaccagctccatatttccatgcctcaagatgtcttttccactggaaactcgtcatcgatggaa |
23495455 |
T |
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| Q |
204 |
gtgtattcaaaaatggccttgcaatt |
229 |
Q |
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|||||||||||||||||||||||||| |
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| T |
23495454 |
gtgtattcaaaaatggccttgcaatt |
23495429 |
T |
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