View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_93 (Length: 228)
Name: NF17117_low_93
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 16293815 - 16293604
Alignment:
| Q |
7 |
cgtcaccacctcaatattaaacattctcaaatatatactcttttaagtgtgtatataaattcattttatttatatatttttccctatccaccttaattat |
106 |
Q |
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| T |
16293815 |
cgtcaccacctcaatattaaacattatcaaatatatacacttttaagtgtgtataaaaattcattttatttatatctttttccatatccaccttaattat |
16293716 |
T |
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| Q |
107 |
aatcttttatcttcgaaagtatttcaagatatatccccataaattagatttttt-gaacaactataacattaatcattgaggtaacaatgtgattgattt |
205 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
16293715 |
aatcttttatcttcgaaagtatttcaag--atatccccataaattagattttttaaaacaaccataacattaatcatcgaggtaacaatgtgattgattt |
16293618 |
T |
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| Q |
206 |
tgtggtgtagactt |
219 |
Q |
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|||||||||||||| |
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| T |
16293617 |
tgtggtgtagactt |
16293604 |
T |
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