View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17118_low_4 (Length: 203)
Name: NF17118_low_4
Description: NF17118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17118_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1241857 - 1242031
Alignment:
| Q |
18 |
gaagtaacatccatgaccttaacagtttcttccagtaagtcctctcctgcctttacaagtttgtccaggttttctttggtagaatcatcggcttttatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
1241857 |
gaagtaacatccatgaccttaacagtttcttccaataagtcctctcctgcctttacaagtttgtccaggttttctttggtagtatcatcgcctcctatgg |
1241956 |
T |
|
| Q |
118 |
atggatctaagttatactcctgcacattatattatatgaaaa-----taaaataaaataatcaccataaagaaat |
187 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
1241957 |
atggatctaaattatactcctgcacattatattatatcaaaataaaataaaataaaataatcaccataaagaaat |
1242031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1252570 - 1252744
Alignment:
| Q |
18 |
gaagtaacatccatgaccttaacagtttcttccagtaagtcctctcctgcctttacaagtttgtccaggttttctttggtagaatcatcggcttttatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
1252570 |
gaagtaacatccatgaccttaacagtttcttccagtaagtcatctcctgcctttacaagtttgtccaggttttctttggtagtatcatcgcctcctatgg |
1252669 |
T |
|
| Q |
118 |
atggatctaagttatactcctgcacattatattatatgaaaa-----taaaataaaataatcaccataaagaaat |
187 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
1252670 |
atggatctaaattatactcctgcacattatattatatcaaaataaaataaaataaaataatcaccataaagaaat |
1252744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 1195836 - 1195881
Alignment:
| Q |
54 |
aagtcctctcctgcctttacaagtttgtccaggttttctttggtag |
99 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||| |||||| |
|
|
| T |
1195836 |
aagtcctctcctgcctttataagtttttccatgttttctatggtag |
1195881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University