View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17119_low_2 (Length: 471)
Name: NF17119_low_2
Description: NF17119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17119_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 449
Target Start/End: Complemental strand, 53639262 - 53638827
Alignment:
| Q |
21 |
tagttacttacttacttatactaatacaactgtccatgcaatattaacctacggttgaaattcaacatgtgnnnnnnn---ggggaaaattcattcaata |
117 |
Q |
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| T |
53639262 |
tagttagttacttacttatactaatacaactgtccatgcaatattaacctacggttgaaattcaacatgtgttttttttttggggaaaattcattcaata |
53639163 |
T |
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| Q |
118 |
tgtgttgtttaagttacatatcttcttcatacatgattattgtaagtagnnnnnnnnnatgaaggaatgattataatattatccatgtgattcgcgcgca |
217 |
Q |
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| T |
53639162 |
tgtgttgtttaagttacatatcttcttcatacatgattattataagtagtttttttttataaaggaatgat---aatattatccatgtgattcgcgcgca |
53639066 |
T |
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| Q |
218 |
acatactattttaatttgctcacatgctgtacttttcgaagtcctttctattttgtttgaagcaagaattagtttctatttgtttactataaaataaatt |
317 |
Q |
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| T |
53639065 |
acatactattttaatttgctcacatgctgtacttttcgaagtcctttctattttgtttgaagcaagaattagtttctatttgtttactataaaataaatt |
53638966 |
T |
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| Q |
318 |
ttaatttggccaaactctctgaattgaagaaataatttgagagaaaaatagtacatgaggatagatacaatacaaccttttctcgatagaacaacaatct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
53638965 |
ttaatttggccaaactctctgaattgaagaaataatttgagagaaaaatagtacatgaggatagatacaatacaaccttttctcgattgaacaacagtct |
53638866 |
T |
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| Q |
418 |
gttttgttga-------atgtgacttgttgctaatggtt |
449 |
Q |
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| T |
53638865 |
gttttgttgatgctgctatgtgacttgttgctaatggtt |
53638827 |
T |
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