View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17119_low_3 (Length: 443)
Name: NF17119_low_3
Description: NF17119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17119_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 3702960 - 3703212
Alignment:
| Q |
20 |
agattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaa-ttgcaacattcttttgtttcatgtattattttgta |
118 |
Q |
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| T |
3702960 |
agattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaaattgcaacattcttttctttcatgtattattttgta |
3703059 |
T |
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| Q |
119 |
tcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaataatacttgttatcaagatat |
218 |
Q |
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| T |
3703060 |
tcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaataatacttcttatcaagatat |
3703159 |
T |
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| Q |
219 |
ttgatagtccatgccaataataaaatctaacttctgcaaatgtatacacacaa |
271 |
Q |
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| T |
3703160 |
ttgatagtccatgccaataataaaatctaacttctgcaaatgtatacatacaa |
3703212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 3699346 - 3699475
Alignment:
| Q |
54 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagtt |
153 |
Q |
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| T |
3699346 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaatt |
3699445 |
T |
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| Q |
154 |
gatatagttaagttacatcagtattttaaa |
183 |
Q |
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| T |
3699446 |
gatatagttcagttacatcattgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Original strand, 3703386 - 3703420
Alignment:
| Q |
353 |
tcacttgcatcattccttctaccacatatgttacc |
387 |
Q |
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| T |
3703386 |
tcacttgcatcattccctctaccacatatgttacc |
3703420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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