View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17119_low_4 (Length: 331)
Name: NF17119_low_4
Description: NF17119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17119_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 28886462 - 28886762
Alignment:
| Q |
17 |
agaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttg |
116 |
Q |
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| T |
28886462 |
agaattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttg |
28886561 |
T |
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| Q |
117 |
accaaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggt |
216 |
Q |
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| T |
28886562 |
accaaggtgctgctagtgttgtgagattagctctgcttcctgatgattccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggt |
28886661 |
T |
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| Q |
217 |
tttatgaagtgtattacaatcatagaatgtgtctcttgctgatattttgtacccttgttaaattgttcactttttgcatgatcatagttcctatttgcca |
316 |
Q |
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| T |
28886662 |
tttatgaagtgtattacaattatagaatgtgtctcttgctgatattttgtacccttgttaaattgttcactttttgcatgatcatagttgctatttgcca |
28886761 |
T |
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| Q |
317 |
t |
317 |
Q |
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| T |
28886762 |
t |
28886762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 28881684 - 28881904
Alignment:
| Q |
20 |
attctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttgacc |
119 |
Q |
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| T |
28881684 |
attctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttatgtgaaaacagacctcaccaaaaacattggcatgttatctgttgacc |
28881783 |
T |
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| Q |
120 |
aaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatatcaaacttttgaatggtttt |
219 |
Q |
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| T |
28881784 |
aaggtgctgctagtgttgtgagattagcactgcttcctgatggttccccttctggcctcttctttattagggaagaaatgtcaaacttttgaatggtttt |
28881883 |
T |
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| Q |
220 |
atgaagtgtattacaatcata |
240 |
Q |
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| T |
28881884 |
attaaatgtattgcaaccata |
28881904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 11951203 - 11951091
Alignment:
| Q |
36 |
atccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttgaccaaggtgctgctagtgt |
135 |
Q |
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| T |
11951203 |
atccaaacttatgtattaattgtgtttgtccgggttttgttaaaacagatatgaatagaaacacaggtgatttatctgttgaaaatggtgctgctagtgt |
11951104 |
T |
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| Q |
136 |
tgtgagattagca |
148 |
Q |
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||| ||||||||| |
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| T |
11951103 |
tgttagattagca |
11951091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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