View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17119_low_5 (Length: 329)
Name: NF17119_low_5
Description: NF17119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17119_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 7698477 - 7698633
Alignment:
| Q |
11 |
cataggacacattatagtgggcatggcccaattgtaagactttgttgaagacatgtgatccttgtccagctcaattccacagtgattgtcaaaggtgaaa |
110 |
Q |
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| T |
7698477 |
cataggacacattatagtgggcatggcccaattgtaagactttgttgaagacatgtgatccttttccagctcaattccacagtgattgccaaaggtgaaa |
7698576 |
T |
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| Q |
111 |
gtacaaataattgctttcacaattaatgatgttgaatatttcaaattcaatgcatga |
167 |
Q |
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| T |
7698577 |
gtacaaataattgctttcacaattaatgatgttgaatatttcaaattcaatgcatga |
7698633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 7698643 - 7698748
Alignment:
| Q |
210 |
caactacagtttcgtggctcttgcatgaccatgcaactactgttgctttaaattcgtggcttctatatttgagtacacattcctgtaggttttttggagg |
309 |
Q |
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| T |
7698643 |
caactacagtttcgtggctcttgcatgaccatgcaactactgttgctttaaattcgtggcttctatatttgagtacacattcctgtaggctttttggagg |
7698742 |
T |
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| Q |
310 |
gttgtg |
315 |
Q |
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| T |
7698743 |
gttgtg |
7698748 |
T |
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