View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17119_low_6 (Length: 306)
Name: NF17119_low_6
Description: NF17119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17119_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 35491030 - 35491309
Alignment:
| Q |
13 |
aatataaggagaaattcatatggtcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatt |
112 |
Q |
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| T |
35491030 |
aatataaggagaaattcatatggtcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatt |
35491129 |
T |
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| Q |
113 |
tcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagttt |
212 |
Q |
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| T |
35491130 |
tcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagttt |
35491229 |
T |
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| Q |
213 |
atgagcatgcaatatattacgttagtgtgtacatgt--catacaagggacaaatttatgtttttattagtatttatatgt |
290 |
Q |
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| T |
35491230 |
atgagcatgcagtatattacgttagtgtgtacatgtcccatacaagggacaattttatgtttttattagtatttatatgt |
35491309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 35497344 - 35497483
Alignment:
| Q |
109 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
208 |
Q |
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| T |
35497344 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
35497443 |
T |
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| Q |
209 |
gtttatgagcatgcaatatattacgttagtgtgtacatgt |
248 |
Q |
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| T |
35497444 |
gtttatgagcatgcaatatattataaaagtgtgtacatgt |
35497483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 35504028 - 35504194
Alignment:
| Q |
62 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
161 |
Q |
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||||| ||||||||||||||||||| |||||||||||| | | ||||||| ||| |||||||| ||||| ||| |||||| | |||||||||||||| |
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| T |
35504028 |
cagctataaagctgagtgatgaaggggaaatattagaagtcctggaagattgtgaagggaagaccttgaagttcatcagtgaaattgaagagaaagatgg |
35504127 |
T |
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| Q |
162 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatata |
228 |
Q |
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| T |
35504128 |
aaaactttggatggcatcagtgttaatgccttatattggtgtttataatttatgagaatgcaatata |
35504194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 35512660 - 35512825
Alignment:
| Q |
62 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
161 |
Q |
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||||| ||||||||||||||||||| |||||| |||||| | |||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
35512660 |
cagctataaagctgagtgatgaaggggaaataatagaaagtctggaagatcgtgaagggaagaccttgaagttcatcagtgaagtggaagagaaagatgg |
35512759 |
T |
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| Q |
162 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatat |
227 |
Q |
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| T |
35512760 |
aaaactttggatggcctctgtcttaatgccttatattggtgtttatagtttatgagaatgcaatat |
35512825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 40161537 - 40161731
Alignment:
| Q |
13 |
aatataaggagaaattcatatggtcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatt |
112 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||| ||||||||||||| ||||||||||||| | |
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| T |
40161537 |
aatataaggagaaattcagatgggcagttttgggttgctttgcataatgcagctataaagttgagtgatgaaggggaaatattagaaa---------ttg |
40161627 |
T |
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| Q |
113 |
tcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagttt |
212 |
Q |
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| T |
40161628 |
tggaagggaagaccatgagatatgttagtgaagcggatgagaaagatggtaaacttttgattggatcagtgttaatgccttatattggtatttatagttt |
40161727 |
T |
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