View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_75 (Length: 247)
Name: NF1711_high_75
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_75 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 14457416 - 14457228
Alignment:
| Q |
1 |
aacaatcatgcgttctcttagagaaattgattcataaaattgtaaaagaaataaaatgttctaattatttattagcgagagtgtcttagagctctatttg |
100 |
Q |
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| T |
14457416 |
aacaatcatgtgttctcttagagaaatttattcataaaattgtaaatgaaataaaatgttctaattatttattagcgagagtgtcttagagctctatttg |
14457317 |
T |
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| Q |
101 |
gcaaaacatagcggataataaactaactcataagtaattcgatataaacttattatccatcagtgaacttataacggataaactaccag |
189 |
Q |
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| T |
14457316 |
gcaaaacacagcggataataaactaactcataagtaattcgatataaacttattatccataagtgaacttataacggataaactaccag |
14457228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 14456070 - 14456013
Alignment:
| Q |
188 |
agtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcctttgcttct |
245 |
Q |
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| T |
14456070 |
agtaaccacaacaattttaatcacccaagtttttaaaaccctcatcgcctctgcttct |
14456013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 49235241 - 49235189
Alignment:
| Q |
185 |
accagtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
237 |
Q |
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| T |
49235241 |
accagtaagcacaacaattttaatcacccaagtttttaaaaccttcatcgcct |
49235189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 33619519 - 33619470
Alignment:
| Q |
188 |
agtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
237 |
Q |
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| T |
33619519 |
agtaagcacaacaatttcattcacccaagttgttaaaaccctcatcgcct |
33619470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 39742032 - 39741988
Alignment:
| Q |
193 |
gcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
237 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
39742032 |
gcacaacaatttcattcacccaagttgttaaaaccctcatcgcct |
39741988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 6898490 - 6898446
Alignment:
| Q |
193 |
gcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
237 |
Q |
| |
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|||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
6898490 |
gcacaacaatttcattcacccaagttgttaaaaccctcatcgcct |
6898446 |
T |
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