View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17120_high_1 (Length: 1013)
Name: NF17120_high_1
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17120_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 551 - 1005
Target Start/End: Complemental strand, 55011867 - 55011404
Alignment:
| Q |
551 |
aaagcggattgtaaatgtaaagtaaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgattt---tatgaataccgtaa |
647 |
Q |
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| T |
55011867 |
aaagcggattgtaaatgtaaa-taaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgatttatgaatgaataccgtaa |
55011769 |
T |
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| Q |
648 |
ataaattatgcaaccnnnnnnntaaattaaggaaga-gtgaaaagt------ccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
740 |
Q |
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| T |
55011768 |
ataaattatgcaaccaaaaaaataaattaaggaagaggtgaaaagtccgtgaccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
55011669 |
T |
|
| Q |
741 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
840 |
Q |
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| T |
55011668 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
55011569 |
T |
|
| Q |
841 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
940 |
Q |
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| T |
55011568 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
55011469 |
T |
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| Q |
941 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctgctcctc |
1005 |
Q |
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| T |
55011468 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctggtcctc |
55011404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 22 - 518
Target Start/End: Complemental strand, 55012395 - 55011885
Alignment:
| Q |
22 |
aggtgcatcaacagcatacactttcctgtttgtgtccatgtcttctggcctctcccaacagttgtggtctgagattgggtcacccacctaatagtacaat |
121 |
Q |
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| T |
55012395 |
aggtgcatcaacagcatacactttcctgtttgtgtccatgtcttctggcctctcccaacagttgtggtctgagattgggtcacccacctaatagtacaat |
55012296 |
T |
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| Q |
122 |
gtttttaattagg-------tga---------acatttttgaagattaaacaaaagtgaaaagaattctcattttaaaaattggatggaagatgagtaac |
205 |
Q |
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| T |
55012295 |
gtttttaattagtcattttttgatatctatctaatattttgaagattaaacaaaagtgaaaagaattctcattttaaaaattggatggaagatgagtaac |
55012196 |
T |
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| Q |
206 |
actgccatgtttggcgcgtgggggacgtactagtatac---acagttaaggaaatggtaaagtaacgaaatggagtatggcatttattttgaagacagtt |
302 |
Q |
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| T |
55012195 |
actgccatgtttggcgcgtgggtgacgtactagtatactacacagttaaggaaatggtaaagtaacgaaatggagtattgcatttatttagaagacagtt |
55012096 |
T |
|
| Q |
303 |
gcaatgccgatgaaattcacggacttcgaggatacgaagtggtccacataatcacacggaaattttt-tgttcaaaatgcacttttattttacataaacc |
401 |
Q |
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| T |
55012095 |
gcaatgccgatgaaattcacggactttgaggatacgaagtggtccacataatcacacggaaatttttgtgttcaaaatgcacttttattttacataaacc |
55011996 |
T |
|
| Q |
402 |
tttgtagtgaacgtgaagtgatgacaaaaataaagggaattgtcaaaatcatcattttttcttaaagtaacgactaaacatggtaagtagtagtgactaa |
501 |
Q |
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| T |
55011995 |
tttgta------gtgaagtgatgacaaaaataaagggaaatgtcaaaatcatcattttttcttaaagtaacgactaaacatggtaagtagtagcgactaa |
55011902 |
T |
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| Q |
502 |
aattactagtacctatt |
518 |
Q |
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| T |
55011901 |
aattactagtacctatt |
55011885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 842 - 930
Target Start/End: Complemental strand, 44152068 - 44151980
Alignment:
| Q |
842 |
ccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaacc |
930 |
Q |
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| T |
44152068 |
ccaaaatcaatcacactccaagctaacatcgtcgttgtaaacgccatcggaaacccgaactttatgttgtcgccggcgtcgtagtaacc |
44151980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 840 - 905
Target Start/End: Original strand, 39419534 - 39419599
Alignment:
| Q |
840 |
caccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttga |
905 |
Q |
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| T |
39419534 |
caccaaactcaataacactccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttga |
39419599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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