View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17120_high_10 (Length: 392)
Name: NF17120_high_10
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17120_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 30960664 - 30961036
Alignment:
| Q |
1 |
cataagcaaattctctggaaggtgtagttcctcactcccttcttcattcttactagatggcctaagagaagaatgtaaactttcttttttcattttcgat |
100 |
Q |
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| T |
30960664 |
cataagcaaattctctgagaggtgtagttcctcactcccttcttcattcttactagatggcctaagagaagaatgtaaactttcttttttcactttcgat |
30960763 |
T |
|
| Q |
101 |
catcattaatccatcctttgatgaccaaagctctcttgtttgtacattgggaagcaatgtgccccatcccaagacacttaaaacaattaatagaagtagt |
200 |
Q |
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| T |
30960764 |
catcattaatccatcctttgatgaccaaagctctcttgtttgtacattgggaagcaatgtaccccatcccaagacacttaaaacaattaatagaagtagt |
30960863 |
T |
|
| Q |
201 |
aaaagaagtggaagtagatttattttgagttaaaagttatttttactttctg---ggtagatcatcattacgttttctcatgaatcaataggtcttgctc |
297 |
Q |
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| T |
30960864 |
aaaagaagtggaagtagattta-tttgagttaaaagttatttttactttctgggaggtagatcatcattacgttttctcatgaatcaataggtcttgctc |
30960962 |
T |
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| Q |
298 |
cacaccttactctctctttttgtagnnnnnnnnnnnnnggttacaacaaggcaaacagaagcaaaaaagaacagaaa |
374 |
Q |
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| T |
30960963 |
cacaccttactctctctttttgtag---ttttttttttggttacaacagggcaaacagaagcaaaaaagaacagaaa |
30961036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 3806436 - 3806353
Alignment:
| Q |
118 |
ttgatgaccaaagctctcttgtttgtacattgggaagcaatgtgccccatcccaagacacttaaaacaattaatagaagtagta |
201 |
Q |
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| T |
3806436 |
ttgatgaccaaaactcttttgtttggacaatgggaagcaatgtgcccccttccaagacacttaaagcatttcgtagaagtagta |
3806353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 38741921 - 38741971
Alignment:
| Q |
270 |
ttttctcatgaatcaataggtcttgctccacaccttactctctctttttgt |
320 |
Q |
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|||||||| | ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
38741921 |
ttttctcaagcatcaataggtcttgctctacaccttactctttctttttgt |
38741971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 38784605 - 38784555
Alignment:
| Q |
270 |
ttttctcatgaatcaataggtcttgctccacaccttactctctctttttgt |
320 |
Q |
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| T |
38784605 |
ttttctcaagcatcaataggtcttgctcttcaccttactctttctttttgt |
38784555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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