View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17120_high_3 (Length: 659)

Name: NF17120_high_3
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17120_high_3
NF17120_high_3
[»] chr7 (4 HSPs)
chr7 (19-530)||(36724252-36724763)
chr7 (47-572)||(711791-712314)
chr7 (25-650)||(716975-717603)
chr7 (517-648)||(36723764-36723895)
[»] chr8 (2 HSPs)
chr8 (382-572)||(14541058-14541248)
chr8 (50-279)||(14540204-14540433)
[»] chr5 (2 HSPs)
chr5 (210-476)||(8267003-8267269)
chr5 (77-129)||(29984959-29985011)
[»] chr4 (1 HSPs)
chr4 (340-439)||(2087537-2087632)
[»] chr2 (3 HSPs)
chr2 (233-291)||(36473917-36473975)
chr2 (24-147)||(36473707-36473831)
chr2 (340-402)||(36474006-36474068)


Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 36724763 - 36724252
Alignment:
Q  19 ccacagttttatggagtttatgaaatagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttctt 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36724763 ccacagttttatggagtttatgaaagagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgagcaacgcatcttctt 36724664  T
Q  119 gaggattggaggttggctcaaattatctgcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaa 218  Q
    ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  36724663 gagaattggagatcggctcaaattatctgcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagccaggaaataattcgatgtaaaa 36724564  T
Q  219 agccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaacgaga 318  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  36724563 cgccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgcatgaga 36724464  T
Q  319 ctttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagacctt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36724463 ctttatttttacaaaaacatattggttctctcctctttgtgatgttaacataggggaagcatctgatttgcatacggctttggagtggacatcagacctt 36724364  T
Q  419 caatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatg 518  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  36724363 caatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgcattatagatg 36724264  T
Q  519 cttgtagacagt 530  Q
    ||||||||||||    
T  36724263 cttgtagacagt 36724252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 47 - 572
Target Start/End: Original strand, 711791 - 712314
Alignment:
Q  47 aggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggaggttggctcaaattatct 146  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||| | || ||| ||||| ||||||| ||    || |||||||||||    
T  711791 aggaacttgaaaccttggcagcaaaagaacgaaacaaacatgcaggtggttgaacgagcaatgcaccttctcgaggattagataccgggtcaaattatct 711890  T
Q  147 gcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagccagccctcgaccgttacaaatgcaa 246  Q
    |  |  ||| |||||| ||||||| |  |||| |   | ||| ||| || ||||||||| |||  |||||||||||| | |||   |||||||| |||||    
T  711891 gaggcagtcgtggagcacccgttaacagaaaccaattggatcaaaatagttaggaaatagttccgtggaaaaagccaacactcagacgttacaagtgcaa 711990  T
Q  247 tattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaacgagactttatttttacaaaaacatattggttc 346  Q
    || |||| ||||||||||||||||||||| ||| ||  ||||||  ||||| |||||| |||| | |   ||||||  | || |||||||||||||||||    
T  711991 tagtgat-cctcattttcttcagctatga-caaggtgagaattgggatgtgcatctgcgatgatgcagaggactttggtcttgcaaaaacatattggttc 712088  T
Q  347 tctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctag 446  Q
    ||||||||||||||||||||||||||||||| |  |  ||| |||||| ||||||| ||||||||| |||||||||||||||||  ||||||| ||||||    
T  712089 tctcctctttgtgatgttgacataggggaaggagtttcttttcatacgactttggaatggacatcataccttcaatttgataatgtagattttgctctag 712188  T
Q  447 actttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatt 546  Q
    ||| |  ||| | |||||||||| |||||||| |  || |||||| | |||||||| |||| ||||||  ||| |||||| |||| ||||| | ||||||    
T  712189 actctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatagttgtttcaaaatagatt 712288  T
Q  547 tcaaaactctcaaattgagtttaata 572  Q
    | ||||||||||  ||||||||||||    
T  712289 ttaaaactctcatgttgagtttaata 712314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 25 - 650
Target Start/End: Original strand, 716975 - 717603
Alignment:
Q  25 ttttatggagtttatgaaataga-ggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttg-agg 122  Q
    |||||||||||||||| || ||| ||||||||||||||||   ||||| ||| |||||||| ||||||||||||||||| | | | || ||||||| | |    
T  716975 ttttatggagtttatggaagagaaggaacttgaaactttggtggcaaaagaatgaaacaaacatgcaggtggttgaacgagcatcacaccttcttggaag 717074  T
Q  123 attggaggttggctcaaattatctgcag-tggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagc 221  Q
    ||||||| |  ||||||||||| | ||| |||||  ||||| |  |||| |  |||| || || |||||| ||| ||||||| |  ||  |||||||| |    
T  717075 attggagatcagctcaaattat-tccaggtggtcgcggagcgcttgttaacagaaaccagtcggatctaagcagttaggaaacagatcagtggaaaaatc 717173  T
Q  222 cagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaacgagactt 321  Q
    || | |||  ||||||||| |||  ||| ||||||||||||||||| ||||||||||| || |||||||  |||||| ||  | |||| | | | |||||    
T  717174 caacactcagccgttacaagtgctttatcgatgcctcattttcttcggctatgaacaaggtgggaattgggatgtgtttccacgatgatgcaggggactt 717273  T
Q  322 tatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaa 421  Q
    | || || |||||| || ||||||||||||||||||||||||| |||||||||||| |  || ||| ||||||  |||| ||||||||||| ||||||||    
T  717274 tgttcttgcaaaaaaatcttggttctctcctctttgtgatgttaacataggggaagtagttggtttacatacgattttgaagtggacatcacaccttcaa 717373  T
Q  422 tttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgctt 521  Q
    |||||||||  ||||||  ||||||||| |  ||| | ||| |||||| |||||| | |  ||  ||||| | |||||||| |||| ||||||| ||  |    
T  717374 tttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattatagttgaat 717473  T
Q  522 gtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatagtcccaca 620  Q
    ||||||| ||||| || ||||||||||||||||||||  ||||||||||||  || || ||||||| | |  || | ||||||||||| |||| ||||||    
T  717474 gtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatagccccaca 717573  T
Q  621 taatactaactcccacacctatgatgatgt 650  Q
    |||| |||  || | ||| |||||||||||    
T  717574 taatgctagatctctcacttatgatgatgt 717603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 517 - 648
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
Q  517 tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc 616  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| |||||||||||||||||||    
T  36723895 tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc 36723796  T
Q  617 cacataatactaactcccacacctatgatgat 648  Q
    |||||||||||| ||| |||||||||||||||    
T  36723795 cacataatactagctctcacacctatgatgat 36723764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 382 - 572
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
Q  382 tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc 481  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||| |  |||   |||||||||| ||||||||       
T  14541058 tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat 14541157  T
Q  482 atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata 572  Q
     || |||||||| || |||||||||| |||||||||| |||||||||  | ||||| ||||  ||| |||||||||  |||||||||||||    
T  14541158 gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata 14541248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 14540204 - 14540433
Alignment:
Q  50 aacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggaggttggctcaaattatctgca 149  Q
    |||| ||||||||| ||||||| |||| ||||||||| |||||||| |||||| | ||| || ||||||||||||||||| | |||||||||||| | |     
T  14540204 aactggaaactttggcagcaaaagaacaaaacaaatacgcaggtgggtgaacgagcaacacaccttcttgaggattggagatcggctcaaattattttcg 14540303  T
Q  150 gtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagccagccctcgaccgttacaaatgcaatat 249  Q
    ||||||  ||| |  |||| | |   ||| | ||  ||||||||||  ||| || | || | ||| |||||||||| |||   | |||||||||||||||    
T  14540304 gtggtcgcggaacgtccgtcatcaggaaccaaccagatctaaacagtcaggtaacagttgggtgggaaaagccagcactcaggcattacaaatgcaatat 14540403  T
Q  250 tgatgcctcattttcttcagctatgaacaa 279  Q
     ||||||||||||||||||  |||||||||    
T  14540404 cgatgcctcattttcttcatatatgaacaa 14540433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 476
Target Start/End: Original strand, 8267003 - 8267269
Alignment:
Q  210 gatggaaaaagccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatga 309  Q
    ||||| ||||||||||   ||||||||||||||||||||||||||| || ||||||||| |   ||||| |||||||||||  ||||||||  |  ||||    
T  8267003 gatgggaaaagccagcaaccgaccgttacaaatgcaatattgatgcttcgttttcttcatccccgaacatagtaggaattgggatgtgtattcgtgatga 8267102  T
Q  310 cgaacgagactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggaca 409  Q
     | |  ||||||| || || |||||||   ||| || |||||||| ||||||||||||||| || ||     || ||| |||||||||  ||||| ||||    
T  8267103 tgcagaagactttgttcttgcaaaaactgcttgattttctcctctatgtgatgttgacatatggaaaattgttggttttcatacggctcgggagtagaca 8267202  T
Q  410 tcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaa 476  Q
    ||| |||||||| |||||||||  ||||||  | |||||| |  ||| | |||||||||| ||||||    
T  8267203 tcaaaccttcaacttgataatatggattttgttttagactctaagaaggttgtggatgcttttagaa 8267269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 29984959 - 29985011
Alignment:
Q  77 gaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggag 129  Q
    ||||||||||||||||| ||||||||||  || ||||||||||| || |||||    
T  29984959 gaaacaaatatgcaggttgttgaacgtgctacacatcttcttgatgaatggag 29985011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 439
Target Start/End: Complemental strand, 2087632 - 2087537
Alignment:
Q  340 ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt 439  Q
    ||||||||||||||||||||||||||| || || ||||||     |||||||||  ||||| | |||||||||||||||||||||||||| | |||||||    
T  2087632 ttggttctctcctctttgtgatgttgatattggagaagcag----tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt 2087537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 36473917 - 36473975
Alignment:
Q  233 cgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattga 291  Q
    |||| ||||||||| ||||||||||| || |||||| ||||||||||||||||||||||    
T  36473917 cgttgcaaatgcaacattgatgcctcgttctcttcatctatgaacaaagtaggaattga 36473975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 36473707 - 36473831
Alignment:
Q  24 gttttatggagtttatgaaatagag-gaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgagg 122  Q
    |||||||||||||| ||||| |||  ||| ||||| ||||| || |||| ||| ||||| |||||||||||||||||||| | ||| ||| ||||| | |    
T  36473707 gttttatggagtttttgaaagagaatgaatttgaagctttggcaacaaaagaatgaaacgaatatgcaggtggttgaacgagcaacacattttcttaaag 36473806  T
Q  123 attggaggttggctcaaattatctg 147  Q
    |||  |  | |||||||||||||||    
T  36473807 atttaaaatcggctcaaattatctg 36473831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 36474006 - 36474068
Alignment:
Q  340 ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttgga 402  Q
    |||||| || ||||||||||||||||| ||||||||||||   | ||||||||||||| ||||    
T  36474006 ttggttttcccctctttgtgatgttgatataggggaagcaatgggtttgcatacggctctgga 36474068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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