View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17120_high_4 (Length: 551)

Name: NF17120_high_4
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17120_high_4
NF17120_high_4
[»] chr7 (2 HSPs)
chr7 (19-536)||(36724819-36725337)
chr7 (23-208)||(716721-716909)
[»] chr5 (4 HSPs)
chr5 (231-535)||(8266476-8266782)
chr5 (355-442)||(29713826-29713912)
chr5 (20-68)||(12715536-12715584)
chr5 (20-68)||(12776767-12776815)
[»] chr2 (2 HSPs)
chr2 (20-168)||(36473498-36473646)
chr2 (26-135)||(29094663-29094772)
[»] chr8 (1 HSPs)
chr8 (19-113)||(14540018-14540113)
[»] chr1 (3 HSPs)
chr1 (112-153)||(12226075-12226116)
chr1 (57-138)||(33314474-33314555)
chr1 (219-267)||(33907504-33907552)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 36724819 - 36725337
Alignment:
Q  19 gtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36724819 gtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatga 36724918  T
Q  119 atatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaacaacgacac- 217  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  36724919 atgccatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacagcaacgacaca 36725018  T
Q  218 -acgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcatt 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  36725019 cacgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaatgatccagtaaatgcaaataggtgttattagcaatttcatt 36725118  T
Q  317 aacacatattctataggcactctgcaccgagtacttgccattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtatt 416  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36725119 aacacatattctataggcacactgcactgagtactttccattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtatt 36725218  T
Q  417 caagatcagctggaccgtgttttgatnnnnnnngattataaattaaaggagaattccataccttggaggattgatcaagaatatcctttaccttcatatg 516  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36725219 caagatcagctggaccgtgttttgat-aaaaaagattataaattaaaggagaattccataccttggaggattgatcaagaatatcctttaccttcacatg 36725317  T
Q  517 agctaaagacgcgtaaataa 536  Q
    ||||||||||||||||||||    
T  36725318 agctaaagacgcgtaaataa 36725337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 716909 - 716721
Alignment:
Q  23 atattataattttggcgtagaatt---ctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaa 119  Q
    ||||||||||||| ||| ||||||   ||| |||||||||||||||||| |||||||  |||||||  ||||||||||||||||||||||||||||||||    
T  716909 atattataattttcgcgaagaattatactaccaattttgtcccataaattcacatcactccaaaccaacacaacattaggacactcgagaagaacatgaa 716810  T
Q  120 tatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaa 208  Q
    |    ||||||||||||||| |||| ||||||||||| ||||||||||||||| || ||||| ||||| ||||||||||  ||||||||    
T  716809 tgatttcctcataattactttcacacattacacaatctattggacaatgaacctatctactaattaggtgtgctcatgttggaaaacaa 716721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 231 - 535
Target Start/End: Complemental strand, 8266782 - 8266476
Alignment:
Q  231 ttttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcattaacacatattctat 330  Q
    |||||||| |||||| | ||||||||||||||||||| ||| ||| ||  ||||| ||||||||| |  ||||||||||||||| | |||||||||||||    
T  8266782 ttttttatcttaggtaggactttgagtttccaaactaaatttcaacgacatggtatatgcaaatgagaattattagcaatttcacttacacatattctat 8266683  T
Q  331 aggcactctgcaccgagtacttgccattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctgga 430  Q
    |||||||   |||||| || || |||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||| | |||||||| ||||| |||     
T  8266682 aggcactacacaccgaatagttaccattctttt-cagccttccaaatcaacttatcttcattaaccagagattgtaaatgtgtattcaaaatcagttggg 8266584  T
Q  431 ccgtgttttgatnnnnnnngattataaattaaaggagaattccataccttggaggattgatcaagaatatc--cttt-accttcatatgagctaaagacg 527  Q
      || |||||||       |||| ||||||||| ||| |||||||||| |||||||||| | ||| |||||  |||| ||||||| |||||| ||||| |    
T  8266583 aagtattttgataaaaaaagattgtaaattaaatgagcattccataccctggaggattgtttaaggatatcatctttcaccttcacatgagcgaaagatg 8266484  T
Q  528 cgtaaata 535  Q
    ||||||||    
T  8266483 cgtaaata 8266476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 442
Target Start/End: Complemental strand, 29713912 - 29713826
Alignment:
Q  355 cattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctggaccgtgttttgat 442  Q
    |||||||||| || |||||||||||||||||| || |||||||||  |||||||||||||||||| || |||||  ||||||| ||||    
T  29713912 cattcttttc-agccttccaaatcaacttatcttcctcaaccaaattttgtaaaggagtattcaatataagctgagccgtgttatgat 29713826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
Q  20 tccatattataattttggcgtagaattctatcaattttgtcccataaat 68  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  12715536 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
Q  20 tccatattataattttggcgtagaattctatcaattttgtcccataaat 68  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  12776767 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12776815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 36473646 - 36473498
Alignment:
Q  20 tccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaa 119  Q
    |||||||||||||||||| | || | |||||||||  | ||||| ||||  |||||| ||||||||||||||||||||||||| || | ||  |||||||    
T  36473646 tccatattataattttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggacattccaaaaacacatgaa 36473547  T
Q  120 tatcatcctcataattacttccacatattacacaatcaattggacaatg 168  Q
    ||  ||||||||||||||| | |||||| |||||||   ||||||||||    
T  36473546 tactatcctcataattactacgacatatgacacaatatgttggacaatg 36473498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 29094663 - 29094772
Alignment:
Q  26 ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcat 125  Q
    |||||||||||||| | ||  ||||  |||||||||||||||| ||||||||||||  |||| ||||| |||| ||| || | |||||| |||||||  |    
T  29094663 ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaacgtgaatattgt 29094762  T
Q  126 cctcataatt 135  Q
    | ||||||||    
T  29094763 cttcataatt 29094772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 14540113 - 14540018
Alignment:
Q  19 gtccatattataattttggcgtagaattctatcaattttgt-cccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaa 113  Q
    |||||||||||||||||| || ||||||||||||||||| | ||| || || || |||||||||||||| ||||| ||||||||||||||||||||    
T  14540113 gtccatattataattttgacgaagaattctatcaatttttttcccgtagattcatatcatgccaaacctacacaatattaggacactcgagaagaa 14540018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 12226116 - 12226075
Alignment:
Q  112 aacatgaatatcatcctcataattacttccacatattacaca 153  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||    
T  12226116 aacatgaatgtcatcctcataattatttccacaaattacaca 12226075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 33314555 - 33314474
Alignment:
Q  57 tgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcatcctcataattact 138  Q
    ||||||| | || ||||| | |||| ||||| ||||| |||||||| || | |||||||||||||  |||||||||||||||    
T  33314555 tgtcccacatattcacattacgccacacctgaacaactttaggacattctacaagaacatgaatactatcctcataattact 33314474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 33907504 - 33907552
Alignment:
Q  219 cgccaaacaagattttttattttaggtggaactttgagtttccaaacta 267  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| ||||    
T  33907504 cgccaaattagattttttattttaggtggcactttgagcttccacacta 33907552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University