View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17120_high_7 (Length: 452)
Name: NF17120_high_7
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17120_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 22537057 - 22537476
Alignment:
| Q |
22 |
tcaagttggtttaagatcatcaaacaatgcacgccacagtacagaatcctcaaaatcataatcatctcctgtcatgttgtaaggactttgaaaatcaatt |
121 |
Q |
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| T |
22537057 |
tcaagttggtttaagatcgtcaaacaatgcacgccacaatacagaatcctcaaaatcataatcatctcttgtcatgttgtaaggactttgaaaatcaatt |
22537156 |
T |
|
| Q |
122 |
tggtttattggccctgaaaatcttggactccttgtagtgtccataaaccttccatcaataggtctttttctcactggagttctattagtgtaaaccattt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22537157 |
tggtttattggccctgaaaatcttggactccttgtagtgtccataaaccttccatcaataggtctttttctcactggacttctattagtgtaaaccattt |
22537256 |
T |
|
| Q |
222 |
ttgaattcaattttccatcaagaggaccagaaaatttcaacannnnnnngttgctaattaccattttctcactatgcattcttccatctaaaggccctga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22537257 |
ttgaattcaattttccatcaagaggaccagaaaatttcaacatttttttgttgctaattaccattttctcactatgcattcttccatctaaaggccctga |
22537356 |
T |
|
| Q |
322 |
aaatgctattttcctgtttctatgcatacctttttcacccttgagttcctcactcaccaatgctcttctccatttcccttggttccatctttgttctctt |
421 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
22537357 |
aaatgctattttcctatttctatgcatacctttttcacctttgagttcctcactcaccaatgctcttctccatttcccttggttccaactttgctctctt |
22537456 |
T |
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| Q |
422 |
tgcaatgacatcatgttcat |
441 |
Q |
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|||||||||||||||||||| |
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| T |
22537457 |
tgcaatgacatcatgttcat |
22537476 |
T |
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