View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17120_high_9 (Length: 407)
Name: NF17120_high_9
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17120_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 6237488 - 6237115
Alignment:
| Q |
1 |
ggcaaatgtaaccttgtgtttacaatgaaagcaaatgcacattttgaaaggnnnnnnncagacaaacatgttacttttacaattcgtgtggccaaaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6237488 |
ggcaaatgtaaccttgtgtttacaatgaaagcaaatgcacattttgaaaggaaaaaaacagacaaacatgttacttttacaattcgtgtggccaaaacca |
6237389 |
T |
|
| Q |
101 |
ttcttaatatttagcacctctctnnnnnnnntatcaagattgaagtctgcattaagtaatatttattttccatcgtttaagtcatttttatcctaccgac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6237388 |
ttcttaatatttagcacctctctaaaaaaaatatcaagattgaagtccgcgttaagtaatatttattttccatcgtttaagtcatttttatcctaccgac |
6237289 |
T |
|
| Q |
201 |
aaccattaatttgtagcaagcgaactaaacttccatgatttatcgagcaattacgttgtttcctccatttagtgacccaccttttgttctaaatgtgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6237288 |
aaccattaatttgtagcaagcgaactaagcttccatgatttatcgagcaattacgttgtttcctccatttagtgacccaccttttgttctaaatgtgaag |
6237189 |
T |
|
| Q |
301 |
acactcgacctttagcattaagtttcctaaatatcatctcctttggtttgacaatattgcttagcaaaatcatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6237188 |
acactcgacctttagcattaagtttcctaaatatcatctcctttggtttgacaatattgcttagcaaaatcatg |
6237115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 33891245 - 33891392
Alignment:
| Q |
136 |
aagattgaagtctgcattaagtaatatttattttccatcgtttaagtcat-ttttatcctaccgacaaccattaatttgtagcaagcgaactaaacttcc |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||||| |||||||| | ||| ||| || |||||||||| | | |||||| |||| |
|
|
| T |
33891245 |
aagattgaagtccacattaagtaatatttcttttcc---gtttaagtcaaattttatcccatcgagaacgataaatttgtagcgaacaaactaagcttca |
33891341 |
T |
|
| Q |
235 |
atgatttatcgagcaattacgttgtttcctccatttagtgacccacctttt |
285 |
Q |
| |
|
| ||||| || ||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
33891342 |
aggatttttcaagcaattacgttggttcatccatttagtgacccatctttt |
33891392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 33953003 - 33952856
Alignment:
| Q |
136 |
aagattgaagtctgcattaagtaatatttattttccatcgtttaagtcat-ttttatcctaccgacaaccattaatttgtagcaagcgaactaaacttcc |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||||| |||||||| | ||| ||| || |||||||||| | | |||||| |||| |
|
|
| T |
33953003 |
aagattgaagtccacattaagtaatatttcttttcc---gtttaagtcaaattttatcccatcgagaacgataaatttgtagcgaacaaactaagcttca |
33952907 |
T |
|
| Q |
235 |
atgatttatcgagcaattacgttgtttcctccatttagtgacccacctttt |
285 |
Q |
| |
|
| ||||| || ||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
33952906 |
aggatttttcaagcaattacgttggttcatccatttagtgacccatctttt |
33952856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 46450249 - 46450298
Alignment:
| Q |
2 |
gcaaatgtaaccttgtgtttacaatgaaagcaaatgcacattttgaaagg |
51 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
46450249 |
gcaaatgtaaccatgtgtgtacggtgaaagcaaatgcacgttttgaaagg |
46450298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University