View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17120_low_12 (Length: 257)
Name: NF17120_low_12
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17120_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 27079870 - 27079656
Alignment:
| Q |
19 |
caaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27079870 |
caaagggtatgctaaaggtgctgatgcggatcataagataacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttct |
27079771 |
T |
|
| Q |
119 |
tttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttccggg |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
27079770 |
tttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgag |
27079671 |
T |
|
| Q |
219 |
aaaagatgttgaaac |
233 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27079670 |
aaaagatgttgaaac |
27079656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 27066153 - 27065941
Alignment:
| Q |
19 |
caaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggtta---tggtgttaataacacgtttaaggattacgataaaaaaggtatt |
115 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| | || |||| ||| ||| |||||| || ||||||||||| || || ||||||||| |
|
|
| T |
27066153 |
caaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatt |
27066054 |
T |
|
| Q |
116 |
tcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttcc |
215 |
Q |
| |
|
|||||||| |||||| ||| | || || ||||||| || ||| | ||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27066053 |
tcttttgctagttataataaaa---ctactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttcc |
27065957 |
T |
|
| Q |
216 |
gggaaaagatgttgaa |
231 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
27065956 |
gggagaagatgttgaa |
27065941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University