View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17120_low_6 (Length: 455)

Name: NF17120_low_6
Description: NF17120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17120_low_6
NF17120_low_6
[»] chr4 (1 HSPs)
chr4 (17-423)||(52409487-52409893)
[»] chr3 (5 HSPs)
chr3 (87-423)||(7775822-7776158)
chr3 (311-421)||(15272469-15272579)
chr3 (311-421)||(40874446-40874556)
chr3 (86-171)||(15272719-15272804)
chr3 (86-171)||(40874221-40874306)
[»] chr8 (1 HSPs)
chr8 (1-313)||(14197321-14197631)
[»] chr1 (2 HSPs)
chr1 (83-172)||(6060147-6060236)
chr1 (1-49)||(6060099-6060147)
[»] chr5 (1 HSPs)
chr5 (101-420)||(23204778-23205097)
[»] chr6 (3 HSPs)
chr6 (311-421)||(11326276-11326386)
chr6 (86-171)||(11326051-11326136)
chr6 (86-171)||(13223891-13223976)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 52409487 - 52409893
Alignment:
Q  17 gttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatc 116  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||| ||||||  |  ||| || ||   ||||||||||| | ||||| |||||||| |    
T  52409487 gttgagaagtttgatgaggagggaatacctacaggaaaggttgctaaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcacc 52409586  T
Q  117 ttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcctaannnnnnnnatgc 216  Q
    ||||||||||  ||||||| |||||||   | ||||||||||||||||| || || ||||| |||| ||| |||| |||| |||| ||        |||     
T  52409587 ttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagctgtattcaacttttgtaagacaaagcaagctgaggatccaaattttttttatga 52409686  T
Q  217 aatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttggtgatgttgttacatttgat 316  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||| |||| | |||||||| ||| |  ||||||| ||||||||||||||||||    
T  52409687 aatacaatgtgatgatgaagatagaatgataaattttttttgggtggatgcaagatcgagattggcttataaggtttttggagatgttgttacatttgat 52409786  T
Q  317 acaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgctttgttgcaag 416  Q
    |||||||||||||||||||||||    ||||||||||| || ||    || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52409787 acaacatataaaaccaacaagtacctcatgccatttgctccttttgttgggttgaatcatcattttcaatctatcttatttggatgtgctttgttgcaag 52409886  T
Q  417 atgagac 423  Q
    |||||||    
T  52409887 atgagac 52409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 87 - 423
Target Start/End: Complemental strand, 7776158 - 7775822
Alignment:
Q  87 ctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaa 186  Q
    ||||||||||| | ||||| |||||||| |||||||||||  ||||||| |||||||   | ||||||||||||| ||| || || ||||| |||| |||    
T  7776158 ctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagttgtattcaacttttgtaagacaaa 7776059  T
Q  187 acaagttgagaatcctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatat 286  Q
     |||| ||||||||| |         ||| |||||||||||||||||||||||||||||||||  | || |||||||||| |||| | |||||||| |||    
T  7776058 gcaagctgagaatccaatttttttttatgaaatacaatgtgatgatgaagatagaatgataaaaattttttgggtggatgcaagatcgagattggcttat 7775959  T
Q  287 caattttttggtgatgttgttacatttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaat 386  Q
     |  ||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||  |    || |||||||||||||||||||    
T  7775958 aaggtttttggagatgttgttacatttgatacaacatataaaaccaacaagtacctcatgccatttgctcctattgttgggttgaatcatcattttcaat 7775859  T
Q  387 ccatcttatttggatgtgctttgttgcaagatgagac 423  Q
    | |||||||||||||||||||||||||||||||||||    
T  7775858 ctatcttatttggatgtgctttgttgcaagatgagac 7775822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 15272579 - 15272469
Alignment:
Q  311 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgctttgt 410  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||      
T  15272579 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgctttac 15272480  T
Q  411 tgcaagatgag 421  Q
    | |||||||||    
T  15272479 tacaagatgag 15272469  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 40874446 - 40874556
Alignment:
Q  311 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgctttgt 410  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||      
T  40874446 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgctttac 40874545  T
Q  411 tgcaagatgag 421  Q
    | |||||||||    
T  40874546 tacaagatgag 40874556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 15272804 - 15272719
Alignment:
Q  86 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 171  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  15272804 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 15272719  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 40874221 - 40874306
Alignment:
Q  86 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 171  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  40874221 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 40874306  T

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Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 14197631 - 14197321
Alignment:
Q  1 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgg 100  Q
    ||||||||| | |||  ||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||  |    
T  14197631 agcaactaataacctttttgagaa-tttgatgaa-aaggaatacatgcagggaaagttgctacaatgtttcatggtggagataatgctttttctagtgtg 14197534  T
Q  101 gattgctggaatcatcttagaaatctca----gaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgag 196  Q
    || ||||||||| |||||||| |||| |    |||||| | || |||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14197533 gactgctggaat-atcttagacatcttaattagaagaaaacattttgacgtgggaaatgctcaagctgtctttaaattttgtaagcaaaaacaagttgag 14197435  T
Q  197 aatcctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttg 296  Q
    |||||  |        |||||||||  ||| ||||||||||| ||||||| ||||  || ||||||||| |||||||||||||| |||||  ||||||||    
T  14197434 aatcc--aatttttttatgcaatacggtgtcatgatgaagatggaatgat-aattctttttgggtggatagaagagcaagattgtcatattgattttttg 14197338  T
Q  297 gtgatgttgttacattt 313  Q
    |||||||||| ||||||    
T  14197337 gtgatgttgtaacattt 14197321  T

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Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 6060147 - 6060236
Alignment:
Q  83 aatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060147 aatgccttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 6060236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6060099 - 6060147
Alignment:
Q  1 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060099 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 6060147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 101 - 420
Target Start/End: Complemental strand, 23205097 - 23204778
Alignment:
Q  101 gattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatc 200  Q
    ||||| ||||||||||||||| ||||| ||   | |||||| ||||| |||||||||||||| || || || ||||| ||| |||||||||  ||||| |    
T  23205097 gattgttggaatcatcttagagatctccgatctaaaaatctggatgttggagatgctcaagcagtgttaaacttttgtaagcaaaaacaagcagagaacc 23204998  T
Q  201 ctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttggtga 300  Q
    | ||        |||| || |||  |||| || | ||||||||||| ||||| || ||||| |||| |||  | || ||||| ||| | | |||||| ||    
T  23204997 caaatttcttttatgcgattcaagttgataatcatgatagaatgattaattttttttgggttgatgcaaggtcgaggttggcctataattattttggaga 23204898  T
Q  301 tgttgttacatttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttgga 400  Q
    ||||||||||||||||||||||||||| |  |||||||||  |||||||||||| || || || |||||||||||||||  ||| ||||| ||||| ||     
T  23204897 tgttgttacatttgatacaacatataagaagaacaagtatcttatgccatttgcgccatttactggattgaatcatcatcatcagtccattttattcggt 23204798  T
Q  401 tgtgctttgttgcaagatga 420  Q
    ||||||||||||||||||||    
T  23204797 tgtgctttgttgcaagatga 23204778  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 11326276 - 11326386
Alignment:
Q  311 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgctttgt 410  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||      
T  11326276 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgctttac 11326375  T
Q  411 tgcaagatgag 421  Q
    | |||||||||    
T  11326376 tacaagatgag 11326386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 11326051 - 11326136
Alignment:
Q  86 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 171  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  11326051 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 11326136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 13223976 - 13223891
Alignment:
Q  86 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 171  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  13223976 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 13223891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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