View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17121_high_2 (Length: 372)
Name: NF17121_high_2
Description: NF17121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17121_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 48730367 - 48730002
Alignment:
| Q |
1 |
tatagacttgctatacaaactgattcaaatggatccttacatcttagaacgctataatttaataccatttgttgatactcctttgcatattgctgcagct |
100 |
Q |
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| T |
48730367 |
tatagacttgctattcaaactgattcaaatcgatccttacatcttagaacgctataatttaataccatttgttgatactcctttgcatattgctgcagct |
48730268 |
T |
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| Q |
101 |
tctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgctttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730267 |
tctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgctttac |
48730168 |
T |
|
| Q |
201 |
aaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagatcttgtccgagtcaaagggatagagggtctaactccattgcatattgctac |
300 |
Q |
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| T |
48730167 |
aaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagaccttgtccgagtcaaagggagagagggtctaactccattgcatattgctac |
48730068 |
T |
|
| Q |
301 |
tcaaactggaaactttgatcttgtagtaaaattcctgtctgtttgtccaggttgtattgatgatgt |
366 |
Q |
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| T |
48730067 |
tcaaactggaaactttgatcttgtagtaaaattcctgtttgtttgtccaggttgtattgaagatgt |
48730002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 4818941 - 4819091
Alignment:
| Q |
57 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
156 |
Q |
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| T |
4818941 |
atttaataccatttgttgaaactcctttgcatattgctgcatctatgggtcatctccaatttgcctccgagattatgaagttaaaaccttcatttgcttg |
4819040 |
T |
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| Q |
157 |
gaaactaaacgagtatggactcagtcccatacatcttgctttacaaaacaa |
207 |
Q |
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| T |
4819041 |
gaagctaaatcaacaaggattcagtcctatccatcttgctatgcaaaacaa |
4819091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 31040851 - 31040743
Alignment:
| Q |
57 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
156 |
Q |
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| T |
31040851 |
atttaattccatttgttgaaactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgcatg |
31040752 |
T |
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| Q |
157 |
gaaactaaa |
165 |
Q |
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| T |
31040751 |
gaagctaaa |
31040743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 31076001 - 31075952
Alignment:
| Q |
116 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaa |
165 |
Q |
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| T |
31076001 |
tttgccactgaaattatgagattgaaaccttcatttgctttgaagctaaa |
31075952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 28865156 - 28865196
Alignment:
| Q |
57 |
atttaataccatttgttgatactcctttgcatattgctgca |
97 |
Q |
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| T |
28865156 |
atttaataccatttgttgaaactcctttacatatcgctgca |
28865196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 30648008 - 30648044
Alignment:
| Q |
61 |
aataccatttgttgatactcctttgcatattgctgca |
97 |
Q |
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| T |
30648008 |
aataccatttgttgaaactcctttacatattgctgca |
30648044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 26087599 - 26087519
Alignment:
| Q |
116 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgct |
196 |
Q |
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||||||||||| ||||||| | |||||||||| ||||||||||||||| || | ||| |||||||||| ||||||||| |
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| T |
26087599 |
tttgccactgaaattatgaatttgaaaccttcatatgcttggaaactaaatcagcaaggattcagtcccatccatcttgct |
26087519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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