View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17121_high_3 (Length: 283)
Name: NF17121_high_3
Description: NF17121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17121_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 45066545 - 45066715
Alignment:
| Q |
20 |
agctcgtatcttatctcaatattgttgtaaacattgaaaatcataaaataagtctttcttgatatacaaaaggaattggataattggaataactcttgct |
119 |
Q |
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| T |
45066545 |
agctcgtatcttatctcaatattgttgtaaacattgaaaatcataaaataagtctttcttgatgtacaaaaggaattggataattggaataactcttgct |
45066644 |
T |
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| Q |
120 |
tgcattagaaaaggaattggatgattgaaaatgttagattgattcactagtaatatgtagattatcaatgc |
190 |
Q |
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| T |
45066645 |
tgcattagaaaaggaattggatgattgaaaatgttagattgattcactagtaatatgtagattatcaatgc |
45066715 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 45066928 - 45066995
Alignment:
| Q |
188 |
tgctatcatatcaatataatttaaagttcatatttatccatattatctcattaagaaaaacaaaaaaa |
255 |
Q |
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| T |
45066928 |
tgctatcatatcaatataatttaaagttcatatttatccatattatctcattaagaaaaacaaaaaaa |
45066995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 45546230 - 45546337
Alignment:
| Q |
65 |
aaataagtctttcttgatatacaaaaggaattggataattggaataactcttgcttgcattagaaaaggaattggatgattgaaaatgttaga-ttgatt |
163 |
Q |
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|||||||| || |||||| |||| |||||| |||| ||| ||||| |||||||||||||| |||| |||||||| ||||||| | ||||| |||||| |
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| T |
45546230 |
aaataagttttccttgatttacattaggaataggatcattcaaataattcttgcttgcattacaaaaacaattggatcattgaaatttttagatttgatt |
45546329 |
T |
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| Q |
164 |
cactagta |
171 |
Q |
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| T |
45546330 |
caccagta |
45546337 |
T |
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