View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17121_high_4 (Length: 231)
Name: NF17121_high_4
Description: NF17121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17121_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 32267846 - 32267721
Alignment:
| Q |
87 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
186 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
187 |
tacatattcggtggatgtaaagaatt |
212 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt |
32267721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 32272030 - 32271836
Alignment:
| Q |
7 |
tcgaagaatgtcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatg |
106 |
Q |
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| T |
32272030 |
tcgaacaatatcataacactttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatagatatga---ttcatg |
32271934 |
T |
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| Q |
107 |
aatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggtggatgt |
204 |
Q |
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| T |
32271933 |
aata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggtggatgt |
32271837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 32267901 - 32267860
Alignment:
| Q |
7 |
tcgaagaatgtcataacactttcttacaattatttatcgtgt |
48 |
Q |
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| T |
32267901 |
tcgaacaatatcataacactttcttacaattatttatcgtgt |
32267860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 48170042 - 48169925
Alignment:
| Q |
19 |
ataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaata-gttttgg |
117 |
Q |
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| T |
48170042 |
ataacagtttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataaatatga---ttcatgaatattttttgg |
48169946 |
T |
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| Q |
118 |
agaatggataaaagtgttcat |
138 |
Q |
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| T |
48169945 |
agaaaggactaaagtgttcat |
48169925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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