View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17121_low_3 (Length: 299)
Name: NF17121_low_3
Description: NF17121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17121_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 14812581 - 14812852
Alignment:
| Q |
11 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
110 |
Q |
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| T |
14812581 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
14812680 |
T |
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| Q |
111 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812681 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
14812780 |
T |
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| Q |
211 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812781 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
14812852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 15259576 - 15259847
Alignment:
| Q |
11 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259576 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
15259675 |
T |
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| Q |
111 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
210 |
Q |
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| T |
15259676 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
15259775 |
T |
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| Q |
211 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259776 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
15259847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 17521599 - 17521328
Alignment:
| Q |
11 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521599 |
acatcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
17521500 |
T |
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| Q |
111 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521499 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
17521400 |
T |
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| Q |
211 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521399 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
17521328 |
T |
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