View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17122_high_1 (Length: 631)

Name: NF17122_high_1
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17122_high_1
NF17122_high_1
[»] chr4 (15 HSPs)
chr4 (326-518)||(21390955-21391147)
chr4 (325-518)||(44275705-44275898)
chr4 (322-520)||(6112627-6112825)
chr4 (326-517)||(3672274-3672466)
chr4 (325-518)||(28093094-28093288)
chr4 (328-518)||(35544911-35545102)
chr4 (326-517)||(49243815-49244006)
chr4 (325-518)||(7217764-7217958)
chr4 (325-517)||(45829256-45829448)
chr4 (326-518)||(46192358-46192551)
chr4 (326-518)||(52191200-52191392)
chr4 (388-512)||(51038768-51038893)
chr4 (386-512)||(54849793-54849919)
chr4 (448-518)||(25437007-25437077)
chr4 (434-512)||(36157840-36157918)
[»] chr1 (9 HSPs)
chr1 (325-517)||(34307136-34307329)
chr1 (325-513)||(2509028-2509217)
chr1 (328-519)||(39249864-39250056)
chr1 (325-517)||(46901733-46901926)
chr1 (325-517)||(28647353-28647545)
chr1 (328-518)||(19258674-19258864)
chr1 (326-499)||(9642866-9643039)
chr1 (394-513)||(29099821-29099939)
chr1 (434-512)||(10146971-10147049)
[»] chr2 (11 HSPs)
chr2 (324-518)||(16089821-16090014)
chr2 (325-517)||(33732569-33732761)
chr2 (324-514)||(44958116-44958307)
chr2 (323-517)||(36315561-36315756)
chr2 (329-518)||(3830900-3831087)
chr2 (322-526)||(37498858-37499065)
chr2 (375-518)||(14572994-14573137)
chr2 (324-517)||(6376236-6376424)
chr2 (326-518)||(37914236-37914428)
chr2 (383-517)||(24137149-24137287)
chr2 (326-509)||(41188777-41188961)
[»] chr8 (15 HSPs)
chr8 (324-517)||(30432339-30432532)
chr8 (326-517)||(42162598-42162790)
chr8 (324-517)||(36189216-36189408)
chr8 (325-514)||(18184556-18184745)
chr8 (324-520)||(31318802-31318999)
chr8 (326-518)||(10203663-10203856)
chr8 (324-514)||(12665347-12665539)
chr8 (334-516)||(44081781-44081964)
chr8 (326-511)||(33726017-33726203)
chr8 (324-519)||(43186025-43186220)
chr8 (366-497)||(42668821-42668952)
chr8 (327-469)||(38845023-38845165)
chr8 (426-512)||(31547-31633)
chr8 (326-512)||(3690602-3690788)
chr8 (376-495)||(35849502-35849623)
[»] chr7 (26 HSPs)
chr7 (325-517)||(45782658-45782851)
chr7 (326-518)||(36346564-36346756)
chr7 (325-517)||(42220962-42221154)
chr7 (325-520)||(26972201-26972397)
chr7 (325-517)||(28307493-28307686)
chr7 (324-511)||(31148296-31148483)
chr7 (326-519)||(7700476-7700670)
chr7 (325-517)||(34108426-34108619)
chr7 (326-517)||(7699882-7700074)
chr7 (326-517)||(7700080-7700272)
chr7 (326-517)||(7700278-7700470)
chr7 (322-514)||(34828069-34828260)
chr7 (325-517)||(13108148-13108339)
chr7 (324-517)||(5811161-5811354)
chr7 (324-511)||(23980137-23980324)
chr7 (340-517)||(30887700-30887877)
chr7 (378-513)||(21807374-21807509)
chr7 (317-475)||(46475066-46475225)
chr7 (325-496)||(36957450-36957620)
chr7 (368-517)||(15020282-15020428)
chr7 (383-512)||(38321014-38321143)
chr7 (388-478)||(20086690-20086780)
chr7 (325-419)||(29953570-29953665)
chr7 (422-475)||(42950109-42950162)
chr7 (324-401)||(42950034-42950111)
chr7 (480-512)||(42950157-42950189)
[»] chr3 (21 HSPs)
chr3 (322-519)||(43999987-44000185)
chr3 (326-518)||(21559560-21559753)
chr3 (324-518)||(51339781-51339973)
chr3 (326-518)||(36370337-36370530)
chr3 (328-518)||(36749405-36749596)
chr3 (326-518)||(46111943-46112136)
chr3 (327-517)||(22894680-22894870)
chr3 (325-517)||(34749896-34750089)
chr3 (325-518)||(30735494-30735687)
chr3 (326-517)||(38231293-38231484)
chr3 (325-514)||(48200688-48200878)
chr3 (321-520)||(39467096-39467295)
chr3 (419-517)||(29460660-29460758)
chr3 (419-517)||(29471512-29471610)
chr3 (326-519)||(39072278-39072466)
chr3 (388-518)||(50966130-50966256)
chr3 (388-518)||(51069265-51069391)
chr3 (326-509)||(20856153-20856334)
chr3 (322-425)||(29472901-29473004)
chr3 (383-495)||(53638157-53638269)
chr3 (424-510)||(29820397-29820483)
[»] scaffold0062 (1 HSPs)
scaffold0062 (326-513)||(6722-6910)
[»] chr5 (17 HSPs)
chr5 (326-517)||(39370927-39371119)
chr5 (326-519)||(13347126-13347320)
chr5 (325-518)||(40887940-40888134)
chr5 (326-518)||(1815619-1815808)
chr5 (326-517)||(2237276-2237468)
chr5 (324-518)||(27553372-27553565)
chr5 (381-519)||(9408094-9408232)
chr5 (325-506)||(14831555-14831737)
chr5 (325-478)||(31800597-31800750)
chr5 (383-520)||(17225316-17225451)
chr5 (326-517)||(19596067-19596258)
chr5 (421-517)||(33404531-33404627)
chr5 (327-518)||(4300544-4300735)
chr5 (325-446)||(42683670-42683792)
chr5 (326-508)||(41003850-41004031)
chr5 (386-520)||(19124532-19124664)
chr5 (383-514)||(12164254-12164388)
[»] chr6 (7 HSPs)
chr6 (321-518)||(3986900-3987097)
chr6 (325-518)||(3118045-3118239)
chr6 (327-517)||(14022934-14023124)
chr6 (325-517)||(24208444-24208636)
chr6 (325-517)||(13697569-13697760)
chr6 (323-518)||(15345656-15345849)
chr6 (488-518)||(7674598-7674628)
[»] scaffold0043 (1 HSPs)
scaffold0043 (324-513)||(87160-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (452-490)||(5943-5981)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 21390955 - 21391147
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  21391055 atctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 325 - 518
Target Start/End: Complemental strand, 44275898 - 44275705
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||||||||||||| |||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
     ||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  44275798 aatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 322 - 520
Target Start/End: Complemental strand, 6112825 - 6112627
Alignment:
Q  322 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 421  Q
    |||||||||||||||| |||||||  ||||||||||||   || ||||||   ||||| |||||||||||| ||||||||||||||||||||||| || |    
T  6112825 aataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctt 6112726  T
Q  422 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 520  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6112725 tttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctctaa 6112627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||| ||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 325 - 518
Target Start/End: Original strand, 28093094 - 28093288
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||| | ||||||||||||   || ||||||  | ||||| |||||||||||| |||| ||||||||||||||||||||| |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28093194 tcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 328 - 518
Target Start/End: Complemental strand, 35545102 - 35544911
Alignment:
Q  328 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattttca 426  Q
    |||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  427 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    | ||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||  |||||| | |||||||||||||  || ||||||   ||||| |||||||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 325 - 518
Target Start/End: Complemental strand, 7217958 - 7217764
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| || ||||| |||||||||||||  || |||||| | ||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttt 7217859  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    | ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  7217858 ttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 45829256 - 45829448
Alignment:
Q  325 aggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| |||||| | ||| ||  |||||||||||| | |||| |||||| || ||||||| |||    
T  45829256 aggaaaaagataggtagacacccttttttgatacacc-tttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  45829355 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 326 - 518
Target Start/End: Complemental strand, 46192551 - 46192358
Alignment:
Q  326 ggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| |||||| |||||||  || |||||| | |||||   |||||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
     |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 52191200 - 52191392
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||| || ||||||| ||||| |||||||  | ||||||| | ||| ||||||| |||||||||||||||  ||||| ||||||| |   | |     
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctctt 52191299  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||  ||||||||||||||||||||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||| |||||||||| |||||    
T  52191300 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  388 tattttagtaattttacatcatatcatcaccca-ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 486  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||   |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  487 gccacctaaggtggttcatgtataag 512  Q
    ||||||||||||||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 386 - 512
Target Start/End: Complemental strand, 54849919 - 54849793
Alignment:
Q  386 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 485  Q
    ||||||||| |||||| |||||| ||||||| ||  | ||||||||||||||||| |||||||||| |||||||| || |||||||| | |||  |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T
Q  486 tgccacctaaggtggttcatgtataag 512  Q
     || | |||||||||||||||||||||    
T  54849819 cgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  448 tcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||| |||||||| ||||| ||| ||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 512
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  434 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 512  Q
    |||||||||||||||||||| |||||| | ||| || |||| |||  ||||||||||||||| || || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 34307136 - 34307329
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  34307236 tcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 325 - 513
Target Start/End: Complemental strand, 2509217 - 2509028
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| ||||||| ||||||||||||||  || |||||| | |||||| |||||| |||||||||||||||||||||||||| ||||| |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 513  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  2509117 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 328 - 519
Target Start/End: Original strand, 39249864 - 39250056
Alignment:
Q  328 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttca 426  Q
    |||||||||| ||||||||||||||||||||||  || |||||| | | |||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  427 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcta 39250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 46901733 - 46901926
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||| | |||||||||||    || |||||| | | |||| | ||| |||||| |||||||||||||||||||||||||| |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46901833 tcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 28647545 - 28647353
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||||| ||||| ||||| |  |  |||||||| |||||||||||  ||||||| |||||| |||||| |||| ||||| ||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  28647445 catctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 328 - 518
Target Start/End: Original strand, 19258674 - 19258864
Alignment:
Q  328 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcat 427  Q
    |||||||||| |||||||| ||||| ||||| |  |  |||||| | |||||||||||  ||||||| |||||| |||||| |||| ||||| |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  428 ctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||| |||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 499
Target Start/End: Original strand, 9642866 - 9643039
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt-t 424  Q
    |||||||||||| ||||||  |||||| ||||| |  || || |||  |||||||| |||| | |||||||||||| |||||||||||||||||  || |    
T  9642866 ggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttct 9642964  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtg 499  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| ||||||| ||||||||    
T  9642965 catctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 394 - 513
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  394 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacct 493  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaaga-gtgtatgccatct 29099841  T
Q  494 aaggtggttcatgtataaga 513  Q
    ||||||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 512
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  434 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 512  Q
    ||||| |||||||| ||| |||||||| |||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 324 - 518
Target Start/End: Complemental strand, 16090014 - 16089821
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||| ||||  |||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccaccttttt 16089915  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16089914 t-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 33732761 - 33732569
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | ||| | ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33732661 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 324 - 514
Target Start/End: Complemental strand, 44958307 - 44958116
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 422  Q
    |||||||||||||| |||||| | |||||||||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 44958208  T
Q  423 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 514  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44958207 tttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 323 - 517
Target Start/End: Complemental strand, 36315756 - 36315561
Alignment:
Q  323 ataggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 421  Q
    ||||||||||||||| |||||| |||||||| |||||||  || |||||| ||||||||| |||||||||||| | |||| |||||| || ||||||  |    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctct 36315657  T
Q  422 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36315656 ttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 329 - 518
Target Start/End: Original strand, 3830900 - 3831087
Alignment:
Q  329 aaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatc 428  Q
    ||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  429 tcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 322 - 526
Target Start/End: Original strand, 37498858 - 37499065
Alignment:
Q  322 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccca 420  Q
    |||||||||||||||| |||||||| ||||| |||||||  || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccct 37498957  T
Q  421 --ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
      ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| | |||||||||  |||| ||||| || ||||||||||||    
T  37498958 ctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctct 37499057  T
Q  519 aagaaata 526  Q
    || |||||    
T  37499058 aataaata 37499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 375 - 518
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  375 catgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  475 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 324 - 517
Target Start/End: Original strand, 6376236 - 6376424
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||| | ||||| |||||||     ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||     | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  6376336 tcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 37914236 - 37914428
Alignment:
Q  326 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | |||||   | |||||||||| | |||| |||||| || ||||||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
     |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  37914335 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 383 - 517
Target Start/End: Original strand, 24137149 - 24137287
Alignment:
Q  383 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg----ggtgtaaaa 478  Q
    ||||||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||    ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  479 aggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
     ||||||| ||||||||||||||| |||||||| |||||    
T  24137249 gggtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 326 - 509
Target Start/End: Complemental strand, 41188961 - 41188777
Alignment:
Q  326 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||  ||||||| |||| | |||||||  |  |||||||| ||||||| || | ||||||||||||||||||||| ||||||| || ||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 509  Q
    ||| || | |||||||||||||| ||| ||||| |||| ||| | | | ||||| |||||||| ||| ||| |||||||||||||    
T  41188861 catatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 8e-72; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 324 - 517
Target Start/End: Complemental strand, 30432532 - 30432339
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||| |||||||||| |||||||||||||  || |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttt 30432433  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  30432432 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||  ||||||||||||  ||| |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 324 - 517
Target Start/End: Complemental strand, 36189408 - 36189216
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||| | ||| |||||||||||||||| |||||||| ||||||||||||| | |||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 325 - 514
Target Start/End: Complemental strand, 18184745 - 18184556
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 514  Q
    ||||||||| |||||||||||   |||||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18184645 catctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 324 - 520
Target Start/End: Complemental strand, 31318999 - 31318802
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatt 422  Q
    |||||||||||||| |||||| | ||||||||||||   || | |||| | | |||| ||||| |||||| |||||||||||||||||||||||||| ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  423 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 520  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  31318899 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctctaa 31318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 326 - 518
Target Start/End: Complemental strand, 10203856 - 10203663
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| ||||||||||| |  || |||||| | |||||| |||||| |||||||||||||||| ||||||||| ||||| ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 324 - 514
Target Start/End: Complemental strand, 12665539 - 12665347
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 422  Q
    |||||||||||||| |||||| | |||||| ||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 12665440  T
Q  423 ttc-atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 514  Q
    ||  |||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12665439 ttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 334 - 516
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  334 atagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctctt 432  Q
    |||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  433 ctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagct 516  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 326 - 511
Target Start/End: Complemental strand, 33726203 - 33726017
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca-tttt 424  Q
    |||||||||||| |||||||| ||||| |||||||     ||||||  |||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 511  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 519
Target Start/End: Complemental strand, 43186220 - 43186025
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||| | ||||||||||||   || |||||| |  |||| ||||||| |||| |||||||||| ||||||||||||||  |||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttt 43186121  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||  |||||||||  || |||||||||||| |||||| |||||||||| |||||    
T  43186120 tcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactcta 43186025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 366 - 497
Target Start/End: Original strand, 42668821 - 42668952
Alignment:
Q  366 tgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgt 464  Q
    |||||||||| ||||  |||||||||| ||||||||| |||||||| |||||||  | | ||| |||||||| |||||||||| |||||||||||| |||    
T  42668821 tgtacatctccatgttgtaggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgt 42668919  T
Q  465 gtgtgggtgtaaaaaggtgtatgccacctaagg 497  Q
    |||||||||| |||  |||||||||||||||||    
T  42668920 gtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 469
Target Start/End: Original strand, 38845023 - 38845165
Alignment:
Q  327 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||||| ||||| ||||| ||||||| ||  |||||| | | ||||||||||| ||||||||||||||  ||||| |||||||||| | ||     
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccctctt- 38845121  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg 469  Q
    |||| |||||||||| |||||  ||| |||||||| ||||||||    
T  38845122 atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 512
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 512  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||  |||||||| ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 512
Target Start/End: Original strand, 3690602 - 3690788
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    ||||||||||||||||||| | ||||| ||||||| ||  | || ||   |||||| || |||||||| |||||||  || || |||||||||   | ||    
T  3690602 ggaaaaagatagatagacatccttttttatacacctttcatatatattctatgtgtcagaggtatttttgtaatttcgcaacacatcatcacctcatctc 3690701  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 512  Q
    ||||||||||| ||| |||| |  || |||||||| ||||||||| | | ||| | |||||| |||||||| || ||||||||||||    
T  3690702 atctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 35849502 - 35849623
Alignment:
Q  376 atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttca--atgtttttgtcacgtgtcacaaatgtgtgtgggtg 473  Q
    |||||| |||||  ||||| |||||| | |||| |||||| ||| || ||||||||||||| |  || |||||| || ||||||||| |||||||  |||    
T  35849502 atgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtg 35849601  T
Q  474 taaaaaggtgtatgccacctaa 495  Q
    | ||| | ||||||||||||||    
T  35849602 ttaaatgatgtatgccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 45782658 - 45782851
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||||| ||||| ||||||  ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  45782758 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 36346564 - 36346756
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tttt 36346662  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 42220962 - 42221154
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| ||||||||||||| ||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  42220962 aggaaaaagataggtagacaccttttt-catacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42221061 ttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 325 - 520
Target Start/End: Original strand, 26972201 - 26972397
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 520  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26972301 tcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctaa 26972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 28307493 - 28307686
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||| |||||||||||||||  || |||||| | | || ||||| ||||||||||||||||||||||||||||||||||| |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  28307593 tcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 324 - 511
Target Start/End: Complemental strand, 31148483 - 31148296
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||||  |||||||||||||  || |  ||| | ||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattt 31148384  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 511  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  31148383 tcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 326 - 519
Target Start/End: Original strand, 7700476 - 7700670
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctcta 7700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 34108619 - 34108426
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34108519 tcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 326 - 517
Target Start/End: Original strand, 7699882 - 7700074
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 326 - 517
Target Start/End: Original strand, 7700080 - 7700272
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 326 - 517
Target Start/End: Original strand, 7700278 - 7700470
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 322 - 514
Target Start/End: Complemental strand, 34828260 - 34828069
Alignment:
Q  322 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 421  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | ||| |||||||||||||||||||||||||||||||||||||| |  |    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  422 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 514  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||    
T  34828160 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 13108339 - 13108148
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||||| ||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||     
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt- 13108241  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 324 - 517
Target Start/End: Original strand, 5811161 - 5811354
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | ||||||||||||| ||||||| |||||||| |||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 324 - 511
Target Start/End: Complemental strand, 23980324 - 23980137
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||| | ||||| |||||   |   |||||||||||| |||||| |||||||||||||||| |||||| ||| |||||| |||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 511  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  23980224 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 340 - 517
Target Start/End: Complemental strand, 30887877 - 30887700
Alignment:
Q  340 agacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaa 439  Q
    ||||||| ||||||||||||   || | |||| | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  30887877 agacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaa 30887778  T
Q  440 tgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  30887777 tgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 378 - 513
Target Start/End: Original strand, 21807374 - 21807509
Alignment:
Q  378 gtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaa 477  Q
    |||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||    
T  21807374 gtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaa 21807473  T
Q  478 aaggtgtatgccacctaaggtggttcatgtataaga 513  Q
    | ||||||||||| ||||||||||||||||||||||    
T  21807474 atggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 317 - 475
Target Start/End: Complemental strand, 46475225 - 46475066
Alignment:
Q  317 taagaaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgtta-ggggtattttagtaattttacatcatatcatc 415  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||  |  |||||||||||||||||| |||||||||||||||||| |||||| ||| ||    
T  46475225 taagatataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtc 46475126  T
Q  416 acccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 475  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  46475125 accccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 325 - 496
Target Start/End: Complemental strand, 36957620 - 36957450
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||||  ||||| ||||||| ||  | |||| | |||||||| ||||||||||||||||||||||| | || |||| |||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaag 496  Q
    ||||||||||| |||| ||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  36957521 catctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 368 - 517
Target Start/End: Complemental strand, 15020428 - 15020282
Alignment:
Q  368 tacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 467  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||| ||  |||||||||  ||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccc-ctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgtg 15020332  T
Q  468 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||| | ||||||||||||| ||||||| |||||||| |||||    
T  15020331 tgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 38321143 - 38321014
Alignment:
Q  383 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 482  Q
    |||| |||||||||| ||| |||||| | |||||||   | |||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||| ||    
T  38321143 agggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgt 38321044  T
Q  483 gtatgccacctaaggtggttcatgtataag 512  Q
    |||||||||||||| ||||| |||||||||    
T  38321043 gtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 388 - 478
Target Start/End: Original strand, 20086690 - 20086780
Alignment:
Q  388 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 478  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||| ||  |||| ||||||| |||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 29953570 - 29953665
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccc 419  Q
    ||||||||||||| |||||||| ||||||||||||   || |||| |  || |||| |||||| ||||| ||||||||||||||||||||||||||    
T  29953570 aggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  422 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 475  Q
    ||||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 42950034 - 42950111
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 401  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| | ||||| | |||||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 42950157 - 42950189
Alignment:
Q  480 ggtgtatgccacctaaggtggttcatgtataag 512  Q
    |||||||||||||||||||||||||||| ||||    
T  42950157 ggtgtatgccacctaaggtggttcatgtctaag 42950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 322 - 519
Target Start/End: Complemental strand, 44000185 - 43999987
Alignment:
Q  322 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcaccca 420  Q
    |||||||||||||||| |||||||  ||||||||||||  ||| |||||  | |||||| |||| ||||||| ||||||||||||||||||||||||||     
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccct 44000086  T
Q  421 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44000085 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctcta 43999987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 326 - 518
Target Start/End: Complemental strand, 21559753 - 21559560
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||||||||||| |||||||||||||  || |||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 324 - 518
Target Start/End: Original strand, 51339781 - 51339973
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||| |||||||| |||||||||||||  || ||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  51339881 tcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 36370337 - 36370530
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||| ||  ||||||||||||  ||| | |||| | |||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 328 - 518
Target Start/End: Complemental strand, 36749596 - 36749405
Alignment:
Q  328 aaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 426  Q
    |||||||||| |||||||  ||||||||||||  ||| |||||| | |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  427 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 46111943 - 46112136
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||||    
T  46112043 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 327 - 517
Target Start/End: Complemental strand, 22894870 - 22894680
Alignment:
Q  327 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||||||||||| |||| |||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 34749896 - 34750089
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||  ||||| | ||||||||||||   || |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34749996 tcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 325 - 518
Target Start/End: Original strand, 30735494 - 30735687
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    | || ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  30735594 t-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 38231484 - 38231293
Alignment:
Q  326 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || || ||| |||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-atttt 38231386  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38231385 catatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 325 - 514
Target Start/End: Complemental strand, 48200878 - 48200688
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||| | ||||||||||||  ||| |||||| | | |||| ||| |||||||| ||||||||||||||||||||||| || |||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttt 48200779  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 514  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  48200778 tcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 321 - 520
Target Start/End: Original strand, 39467096 - 39467295
Alignment:
Q  321 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 420  Q
    ||||||||||||||||| || ||||| ||||| |||||||     |||||| ||||||||||| || |||||||||||||| | |||| ||| ||||||     
T  39467096 aaataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccc 39467195  T
Q  421 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 520  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| |||||||| || ||| ||||||| ||| |||| ||||||||    
T  39467196 ttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctctaa 39467295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 419 - 517
Target Start/End: Complemental strand, 29460758 - 29460660
Alignment:
Q  419 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460758 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 419 - 517
Target Start/End: Complemental strand, 29471610 - 29471512
Alignment:
Q  419 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29471610 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 519
Target Start/End: Original strand, 39072278 - 39072466
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||| |||||||  ||||| ||||| | ||  |||||| | ||||||| | ||||||||||||||     ||||| ||||||||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttc 39072372  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    ||||||||||| ||||||| || ||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||    
T  39072373 atctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctcta 39072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 388 - 518
Target Start/End: Complemental strand, 50966256 - 50966130
Alignment:
Q  388 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 487  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  488 ccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||| | |||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 388 - 518
Target Start/End: Complemental strand, 51069391 - 51069265
Alignment:
Q  388 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 487  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  488 ccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||| | |||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 326 - 509
Target Start/End: Original strand, 20856153 - 20856334
Alignment:
Q  326 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| | ||| |||||| | |||||||  |  |||||| | ||||||| |||||||||| |||||||||| |||| ||||||| || ||||    
T  20856153 ggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt 20856251  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 509  Q
     || |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  20856252 -atatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 29473004 - 29472901
Alignment:
Q  322 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 421  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | |||||||||||||||||||||||||||||||||||||||||| || |    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccct 29472905  T
Q  422 tttc 425  Q
    ||||    
T  29472904 tttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  383 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 482  Q
    ||||||||||||| |||||||||||| ||||||||||  | |||||||||||||| ||||||||  ||| |||||| | ||||||||||||| ||| |||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  483 gtatgccacctaa 495  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 510
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtata 510  Q
    ||||||||||||| ||||||||||  || | |||||| ||| ||||||||| |||  |||||||||||||||||||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 326 - 513
Target Start/End: Complemental strand, 6910 - 6722
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||| ||||||||||||||||   || |||||| | |||||| |||||| ||||| |||||||||||||||||||||||||| ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 513  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 39371119 - 39370927
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 326 - 519
Target Start/End: Complemental strand, 13347320 - 13347126
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctcta 13347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 325 - 518
Target Start/End: Original strand, 40887940 - 40888134
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | | || | |||| |||||||||||||||||||||||||||| ||||| |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  40888040 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 1815619 - 1815808
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 425  Q
    |||||||||||| |||||||||||||||||| |  | |   ||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaaat---gtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  426 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  1815716 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 2237468 - 2237276
Alignment:
Q  326 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | | | || |||||||||||| |||||||||||||||||||||||||| ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 324 - 518
Target Start/End: Original strand, 27553372 - 27553565
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||| ||||||||||||| |||||||||||||  || |||||| |  |||||||||| |||||||||||||||||||||| || ||||||  |||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttt 27553470  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||    
T  27553471 tcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 381 - 519
Target Start/End: Original strand, 9408094 - 9408232
Alignment:
Q  381 ttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaag 480  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  481 gtgtatgccacctaaggtggttcatgtataagagctcta 519  Q
    | ||||| ||||| |||||||||||||||||||||||||    
T  9408194 gcgtatgtcacctgaggtggttcatgtataagagctcta 9408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 325 - 506
Target Start/End: Complemental strand, 14831737 - 14831555
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| | | | || |||||||||||| | |||||||||||||||||||||||| |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatg 506  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14831637 tcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 31800750 - 31800597
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 478  Q
    ||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 383 - 520
Target Start/End: Complemental strand, 17225451 - 17225316
Alignment:
Q  383 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 482  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |     
T  17225451 aggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--ga 17225354  T
Q  483 gtatgccacctaaggtggttcatgtataagagctctaa 520  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17225353 gtatgccacctaaagtggttcatgtataagagctctaa 17225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 326 - 517
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  326 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    |||||||||||| |||||| |||||||| | | |||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    || |||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 421 - 517
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  421 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 4300544 - 4300735
Alignment:
Q  327 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 426  Q
    ||||||||| |||||||| | ||||| ||||| |  |  |||||| |||||||||||||| ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  427 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    |||||| |||||||||||||| ||  |||||||||| ||||||||||||||| | | |||| |||||||  |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 42683792 - 42683670
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    |||||||||||||||||||| | |||||||||||||  || |||||| | | || | ||||||||||||||||||||||||||||||||| || || |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  424 tcatctcttctttcaatgttttt 446  Q
    |||||||||||||||||||||||    
T  42683692 tcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 326 - 508
Target Start/End: Original strand, 41003850 - 41004031
Alignment:
Q  326 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| ||| |||||||| | |||||||  |  |||||| | ||| ||| |||| || |||||||||||||||||| ||||||| || ||||    
T  41003850 ggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggata-tttagtaattttacatcacatcatcatccctttt 41003948  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgta 508  Q
     || |||| ||||||| |||||| ||| ||||| |||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  41003949 tatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 386 - 520
Target Start/End: Original strand, 19124532 - 19124664
Alignment:
Q  386 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 485  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||| |||  ||||||| |||||||||||||  ||| |||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgt-caaatgtgta 19124629  T
Q  486 tgccacctaaggtggttcatgtataagagctctaa 520  Q
    ||||| ||||| | || ||||||||||| ||||||    
T  19124630 tgccatctaagatagtccatgtataagaactctaa 19124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 12164388 - 12164254
Alignment:
Q  383 aggggtattttagtaattttacatcatatcatcacccattttcatctct---tctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaa 479  Q
    ||||| ||||||||||||| |||||| | ||||||||  |  |||||||   |||||||||||||||| ||| || ||||| |||||||| || | |||     
T  12164388 aggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaag 12164289  T
Q  480 ggtgtatgccacctaaggtggttcatgtataagag 514  Q
      ||| ||||||||||| |||||||||||||||||    
T  12164288 aatgtgtgccacctaagatggttcatgtataagag 12164254  T

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Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 321 - 518
Target Start/End: Original strand, 3986900 - 3987097
Alignment:
Q  321 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 420  Q
    ||||||||||||||||| |||||| | |||||||||||    || |||| | | ||||| ||| |||||||| |||||||||||||||||| |||| ||     
T  3986900 aaataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccc 3986999  T
Q  421 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3987000 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 3987097  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 325 - 518
Target Start/End: Original strand, 3118045 - 3118239
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 423  Q
    ||||||||||||| |||||| | ||||||||||| |  || |||||| || ||||| ||||||||||||||||||||||||||||| ||| ||||| |||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccaccctttt 3118144  T
Q  424 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    | |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3118145 ttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 327 - 517
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  327 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 426  Q
    ||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  427 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 24208636 - 24208444
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||||| | ||||| |||||||  |  | |||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||  |||||| ||||||| | ||||| |||||||| |||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

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Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 13697760 - 13697569
Alignment:
Q  325 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 424  Q
    ||||||||||||| |||| | | |||||||||||  | || |||||| | |||||||||| | |||||||||||||||| ||||||||||||||| ||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  425 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 517  Q
    ||||||||||||||||||||||  ||||| |||||||||||| | ||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  13697660 catctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

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Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 323 - 518
Target Start/End: Original strand, 15345656 - 15345849
Alignment:
Q  323 ataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 422  Q
    |||||||||| |||| |||||| ||||||||||||||   || |||||| |  |||| ||||||| |||| |||||||| | ||||||||||||||  ||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctttt 15345755  T
Q  423 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 518  Q
    ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||  || ||||||||||||||||||| |||||||||||||||    
T  15345756 ttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 518
Target Start/End: Original strand, 7674598 - 7674628
Alignment:
Q  488 ccacctaaggtggttcatgtataagagctct 518  Q
    |||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctct 7674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 324 - 513
Target Start/End: Original strand, 87160 - 87350
Alignment:
Q  324 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacat--catatcatcacccat 421  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| ||   ||||||||||   |    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatt 87259  T
Q  422 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 513  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  87260 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  452 gtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 490  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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