View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17122_low_10 (Length: 251)
Name: NF17122_low_10
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 44695494 - 44695258
Alignment:
| Q |
6 |
agcatcacagaggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaa--attaattaatgttt |
103 |
Q |
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| T |
44695494 |
agcatcacaaaggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaattattaattaatgttt |
44695395 |
T |
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| Q |
104 |
tgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695394 |
tgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatca |
44695295 |
T |
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| Q |
204 |
tatcaacattacatttttccattttgccatgatgatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44695294 |
tatcaacattacatttttccattttgccatgatgatg |
44695258 |
T |
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