View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17122_low_13 (Length: 223)
Name: NF17122_low_13
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_13 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12768 - 12552
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12768 |
ataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatgataaagagtaatgatg |
12669 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12668 |
gggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatg |
12569 |
T |
|
| Q |
201 |
atgagaatgatgatgtc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12568 |
atgagaatgatgatgtc |
12552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 16284949 - 16285165
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16284949 |
ataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatgataaagagtaatgatg |
16285048 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16285049 |
gggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatg |
16285148 |
T |
|
| Q |
201 |
atgagaatgatgatgtc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16285149 |
atgagaatgatgatgtc |
16285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc |
18231604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
216 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt |
11555916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
| Q |
90 |
gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta |
189 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
11098355 |
gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata |
11098454 |
T |
|
| Q |
190 |
ttataataatgatg |
203 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11098455 |
ttataataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10641233 - 10641449
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
10641233 |
ataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatgatagagagtaatgacg |
10641332 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatg |
200 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
10641333 |
aggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgaggttatattataataatg |
10641432 |
T |
|
| Q |
201 |
atgagaatgatgatgtc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10641433 |
atgagaatgatgatgtc |
10641449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 14970256 - 14970060
Alignment:
| Q |
23 |
tagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacag |
122 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||| || ||||| |||||||||||| |||||||| |||||||||||| ||||||||| |||| | ||| |
|
|
| T |
14970256 |
tagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatgatagagagtaatgatgaggagtcctacaactgtgacaa |
14970157 |
T |
|
| Q |
123 |
agagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||| | |||||| ||||||||||| |||| || ||||||||| |||||||||||||||| || ||||||||||| |||||||||| |||||| |
|
|
| T |
14970156 |
agaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatgatgttatattataataacaatgagaatgacgatgtc |
14970060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
| Q |
62 |
taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
161 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||| ||||||||| | | | ||||||||| ||||||| || | || |
|
|
| T |
10906699 |
taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat |
10906798 |
T |
|
| Q |
162 |
tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
10906799 |
aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc |
10906854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
160 |
attactacgatgggaaa |
176 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt |
22614857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc |
11655474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 20026161 - 20025970
Alignment:
| Q |
26 |
aatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagaga |
125 |
Q |
| |
|
||||||||||||||||||||| || ||| || |||||||| ||||||||| | |||||| ||| |||||| | ||||||||| |||||| ||| ||| |
|
|
| T |
20026161 |
aatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgatagagaataatgaagaggagtcctacaactatgacaaaga |
20026062 |
T |
|
| Q |
126 |
gtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
|| ||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
20026061 |
gtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgttatattataataacaatgacaatgatgatgtc |
20025970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
| Q |
102 |
ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa |
195 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
196 |
taatgatg |
203 |
Q |
| |
|
|||||||| |
|
|
| T |
13477589 |
taatgatg |
13477596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 4531687 - 4531820
Alignment:
| Q |
26 |
aatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagaga |
125 |
Q |
| |
|
||||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| |||| | | || ||| |
|
|
| T |
4531687 |
aatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ataa-tgtgacgaaga |
4531784 |
T |
|
| Q |
126 |
gtaatgacgagtaatattatatatatgtaaagaaat |
161 |
Q |
| |
|
|| ||||| | | |||||||||||||||||| |||| |
|
|
| T |
4531785 |
gtgatgacaattgatattatatatatgtaaataaat |
4531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24831939 - 24832161
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||||||| || || ||| || |||| | ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
24831939 |
ataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgatagagagtaatgatg |
24832038 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatgatgagtttgtattata |
194 |
Q |
| |
|
|||||||||||| | | ||| ||||| |||| || ||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||| |
|
|
| T |
24832039 |
aggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatgatgaggttatactata |
24832138 |
T |
|
| Q |
195 |
ataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
24832139 |
atattgatgagaatgacgatgtc |
24832161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
| Q |
66 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
165 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| |||||||| ||| | | |
|
|
| T |
13935849 |
gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat |
13935750 |
T |
|
| Q |
166 |
acgatgggaaatgatgagtttgtattataataatga |
201 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| |
|
|
| T |
13935749 |
acgat-ggaaataatgatgttatattataataatga |
13935715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 14481539 - 14481761
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| || |||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14481539 |
ataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatgatagagagtaatgatg |
14481638 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattata |
194 |
Q |
| |
|
|||||||||||||| | ||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| |||||||| || || |||| |
|
|
| T |
14481639 |
aggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatgatgaggttatactata |
14481738 |
T |
|
| Q |
195 |
ataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||| ||||||| |||| |||||| |
|
|
| T |
14481739 |
atattgatgaggatgacgatgtc |
14481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
17791091 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
17790992 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
151 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
17790991 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
| Q |
1 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
100 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
19099531 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
19099432 |
T |
|
| Q |
101 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
151 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
19099431 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
67 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
127 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
| Q |
67 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
127 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21975335 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
| Q |
67 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
127 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21997766 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21997706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 44586432 - 44586574
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
44586432 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaa |
44586529 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatga |
204 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
44586530 |
attactacgatatgaaatgatgatgttaaattataataataatga |
44586574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
| Q |
66 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
151 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || || || || ||||||||||||||| |
|
|
| T |
16862432 |
gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat |
16862347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
| Q |
60 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
159 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
160 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
217 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc |
1389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
| Q |
66 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
165 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
166 |
acgatgggaaatga |
179 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1567141 |
acgatgagaaatga |
1567154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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