View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17122_low_14 (Length: 215)
Name: NF17122_low_14
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 44260953 - 44261137
Alignment:
| Q |
19 |
ctatagataggagtatattgttagcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccatcatcgtaaa |
118 |
Q |
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| T |
44260953 |
ctatagataggagtatattgttagcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccgtcatcgtaaa |
44261052 |
T |
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| Q |
119 |
gcattcttgtaaaagccacctccagaaacaaaagagcgttattcgtcatagcaatcggcgaatctactgtcaccatttcttctca |
203 |
Q |
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| T |
44261053 |
gcattcttgtaaaagccacctccagaaacaaaagagcgttattcgtcatagcaatcggtgaatctactgtcaccatttcttctca |
44261137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 44265119 - 44265151
Alignment:
| Q |
32 |
tatattgttagcaattgctctctaaggatgaaa |
64 |
Q |
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| T |
44265119 |
tatattgttagcaattgctatctaaggatgaaa |
44265151 |
T |
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