View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17122_low_2 (Length: 618)
Name: NF17122_low_2
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 48664839 - 48664239
Alignment:
| Q |
1 |
ctgatgatgctattttcttggaatcaagctttcatattgaggctatataatatataaaagtagaaaagtatatttcttcaatggtaatataaaagagaag |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48664839 |
ctgatggtgctattttcttggaatcaagctttcatattgaggctatataatatataaaagtagaaaaatatatttcttcaatggtaatataaaagagaag |
48664740 |
T |
|
| Q |
101 |
aggattttgcagactcaactgtataatttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664739 |
aggattttgcagactcaactgtataatttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaa |
48664640 |
T |
|
| Q |
201 |
gactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48664639 |
gactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctcca |
48664540 |
T |
|
| Q |
301 |
gtcattccaacaacatgctgtttttcttgtaaaattttaactatttcatatttgtgttctgaaagtattcgttgttaaaactaatcattaagcagatttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
48664539 |
gtcattccaacaacatgctgtttttcttgtaaaattttaactatttcatatttgtgttctgaaaatattcgttgttaaaactaatcattaagcatatttg |
48664440 |
T |
|
| Q |
401 |
gtgaaaaagaagcatttatgaaaataacaggtaaccacatccgcaagattacttcttatttggatggaaaatattaactaatgttgactatggattatta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664439 |
gtgaaaaagaagcatttatgaaaataacaggtaaccacatccgcaagattacttcttatttggatggaaaatattaactaatgttgactatggattatta |
48664340 |
T |
|
| Q |
501 |
tacaaggttcatatctgatcagtaatttatccatattttctgggttatatttataggttattggaagctaaaaagtgtaacaaagatcaattgcagaaga |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48664339 |
tacaaggttcatatctgatcgaaaatttatccatattttctgggttatatttataggttattggaagctaaaaagtgtaacaaagatcaattgcagaaga |
48664240 |
T |
|
| Q |
601 |
t |
601 |
Q |
| |
|
| |
|
|
| T |
48664239 |
t |
48664239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 121 - 313
Target Start/End: Complemental strand, 15869300 - 15869108
Alignment:
| Q |
121 |
gtataatttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttc |
220 |
Q |
| |
|
||||| || ||||| ||||| || ||||||| || ||||| ||||| ||||| |||||||| || ||||| || |||||||||||||||| ||||| || |
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| T |
15869300 |
gtatagttcttcattctttggaagatagctctacttgttaagacagcactgatgataacactcaaaccaggttctgttaagactatatcagaagcacctc |
15869201 |
T |
|
| Q |
221 |
ttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattccaacaa |
313 |
Q |
| |
|
|||| ||||| |||||||||| ||||| |||||||| || ||||| |||||||| || |||||||| || |||||||||||||||||||||| |
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|
| T |
15869200 |
ttgcagcatcagtagcatcagcaacagcaattccaatatcggcttttttcaatgcaggagcatcattcacaccatctccagtcattccaacaa |
15869108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 21980457 - 21980602
Alignment:
| Q |
160 |
aacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgt |
259 |
Q |
| |
|
|||||||| || | ||| ||||| || || |||||||| ||||| || || | ||||| ||||||||||| || ||||||| ||||| || ||||||| |
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|
| T |
21980457 |
aacacagcactcacaatcacactcaaacccggctcagtcaagacaatgtctgaggcactccttgcggcatcagttgcatcagcaacagcaataccaatgt |
21980556 |
T |
|
| Q |
260 |
ctgctttcttcaatgccggggcatcatttactccatctccagtcat |
305 |
Q |
| |
|
|||| ||||||||||| || ||||| ||||| |||||||| ||||| |
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|
| T |
21980557 |
ctgccttcttcaatgctggtgcatcgtttacaccatctccggtcat |
21980602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 309
Target Start/End: Complemental strand, 1462766 - 1462619
Alignment:
| Q |
162 |
cacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtct |
261 |
Q |
| |
|
|||||| |||||||| ||||| | ||||| ||||| | ||| ||||||| ||||||||| || |||||||||||||||| ||||| |||||||| ||| |
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|
| T |
1462766 |
cacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatct |
1462667 |
T |
|
| Q |
262 |
gctttcttcaatgccggggcatcatttactccatctccagtcattcca |
309 |
Q |
| |
|
|||||||| | |||||||| |||||||| |||||||||||||||||| |
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|
| T |
1462666 |
gctttctttagcgccggggcgtcatttacaccatctccagtcattcca |
1462619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 1496833 - 1497021
Alignment:
| Q |
121 |
gtataatttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttc |
220 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| || | ||||||||| ||||| ||||| | || || ||||| | ||| ||||||| |||||||| |
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|
| T |
1496833 |
gtataattcttcatcctttgaaaaatcgctcggctggtgagcacagcgctaataatgacactaagaccgggttcagtgaggacaatatcagaagcacttc |
1496932 |
T |
|
| Q |
221 |
ttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattcca |
309 |
Q |
| |
|
| || |||||||||||||||| || || ||||| || || |||||||| || || || ||||| ||||| |||||||| ||||||||| |
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|
| T |
1496933 |
tagcagcatctgtagcatcagcaactgcaattccgatatcggctttctttaacgcaggagcatcgtttacaccatctcctgtcattcca |
1497021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 26790508 - 26790368
Alignment:
| Q |
169 |
ctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttct |
268 |
Q |
| |
|
|||||||| ||||| | ||||| ||||| | ||| ||||||| ||||||||| || |||||||| ||||||| || || ||||||||||||||||||| |
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|
| T |
26790508 |
ctgataatgacactaagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtggcatcagcaaccgcaattccaatgtctgctttct |
26790409 |
T |
|
| Q |
269 |
tcaatgccggggcatcatttactccatctccagtcattcca |
309 |
Q |
| |
|
| | ||| || ||||| ||||| |||||||||||||||||| |
|
|
| T |
26790408 |
ttagtgcaggtgcatcgtttacaccatctccagtcattcca |
26790368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 305
Target Start/End: Complemental strand, 44533028 - 44532841
Alignment:
| Q |
118 |
actgtataatttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcac |
217 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || || ||||| || ||||||||||| | |||||| || || || || ||||| | |||| |
|
|
| T |
44533028 |
actgtataatttttcattctttgaaagatagctcggctggtcaaaacagcacttataataacactgaggccaggttctgtcaaaacaatatcggatgcac |
44532929 |
T |
|
| Q |
218 |
ttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcat |
305 |
Q |
| |
|
| | || ||||| |||||||| | || ||||| ||||||||||| ||||| | ||||| |||||||| |||||||| |||||||| |
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|
| T |
44532928 |
tacgagctgcatcggtagcatctgcaacggctataccaatgtctgccttcttgagagccggtgcatcattcactccatcaccagtcat |
44532841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 53075363 - 53075493
Alignment:
| Q |
127 |
tttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcgg |
226 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| || || ||||| |||||||| || ||||| || || ||||| || |||| ||||| |||||| | |
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|
| T |
53075363 |
tttttcattctttgaaaaatagctctactagttaagactgcactgatgataacactcaatccaggttctgtcaagacaatgtcagaagcacctcttgcag |
53075462 |
T |
|
| Q |
227 |
catctgtagcatcagacacagctattccaat |
257 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |
|
|
| T |
53075463 |
catctgtagcatcagcaacagcgattccaat |
53075493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 127 - 313
Target Start/End: Original strand, 48436827 - 48437013
Alignment:
| Q |
127 |
tttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcgg |
226 |
Q |
| |
|
|||||||||||||| || || |||| |||||||||||| || || | ||| ||||||| || ||||| || || || || |||| |||||||||||| | |
|
|
| T |
48436827 |
tttttcatcctttggaagatggctctgctagttaacaccgcactcacaatcacacttagtcctggctctgtcaaaacaatgtcagaagcacttcttgcag |
48436926 |
T |
|
| Q |
227 |
catctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattccaacaa |
313 |
Q |
| |
|
|||| || ||||| || || || || |||||||| ||||||| ||| || |||||||| || ||||| |||||||| ||||||| |
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|
| T |
48436927 |
catcagttgcatcgtcaactgcaataccgatgtctgccttcttcagtgcaggtgcatcattcacaccatcaccagtcataccaacaa |
48437013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 50276288 - 50276209
Alignment:
| Q |
190 |
ggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttctt |
269 |
Q |
| |
|
|||||||| | ||| ||||||| ||||| ||| || |||||||||||||||| ||||| |||||||| |||||| |||| |
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|
| T |
50276288 |
ggctcagtaaggacaatatcagaagcacctctagcagcatctgtagcatcagcaacagcaattccaatatctgctctctt |
50276209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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