View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17122_low_3 (Length: 385)
Name: NF17122_low_3
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_3 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold0114 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 5986 - 5650
Alignment:
| Q |
16 |
aggtacgtgcggtctctaaacatatgtccattcttcatgatggggataatgtcatctcggacccaattgagatagaggaccatgttgtgtcatattttca |
115 |
Q |
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| T |
5986 |
aggtacgtgcggtttctaaacatatgtccattcttcatgatagggataatgtcatctcggacccaattgagatagaggagcatgttgtgtcatattttca |
5887 |
T |
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| Q |
116 |
gtctatttttagcgttgataatgattgtggggctaataatatggtagagcaattggttccaagattggttacggaggctgagaatgatttattatgttgc |
215 |
Q |
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| T |
5886 |
gtctatttttagcgttgataatgattgtggggctaataatatggtagagcaattggttccaagattggttacggaggctgagactgatttattatgtcgt |
5787 |
T |
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| Q |
216 |
ttacctgtgatgtctgaaataaagtctgcggtttttcatcttaatgatgatagtgcgccgggtccagacgggtttggtgggcatttttacaagacgtttt |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
5786 |
ttacctatgatgtctgaaataaagtctgcggtttttgatcttaatggtgatagtgcgccgggtcctgacgggtttggtgggcatttttactagacatttt |
5687 |
T |
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| Q |
316 |
gggacattatttttgttgatgtggtactttcggttca |
352 |
Q |
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|||||||||||| || ||||||||||||||||||||| |
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| T |
5686 |
gggacattatttctgctgatgtggtactttcggttca |
5650 |
T |
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