View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17122_low_4 (Length: 368)
Name: NF17122_low_4
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 9040216 - 9040551
Alignment:
| Q |
15 |
tgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggaatttcaagcgca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9040216 |
tgattggatgaacaatagaccagagaggtttaaaatatatgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggaatttcaagcgca |
9040315 |
T |
|
| Q |
115 |
gaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattctagatcaaaagagaaggca |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9040316 |
gaaggtttttgttctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattctagatcaaaagagaaggcc |
9040415 |
T |
|
| Q |
215 |
gaatctttacctgacataatgaggagtaaaagttacctaaatctatgttttcaagtatactacttgttcaataaaatgtttatttttcagaaaaaatgtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9040416 |
gaatctttacctgacataatgaggagtaaaggttacctaaatctatgtttccaagta---tacttgttcaaaaaaatgtttatttttcagaaaaaatgtt |
9040512 |
T |
|
| Q |
315 |
cnnnnnnnt---gagtaaatgttgatttttcaagtgtcg |
350 |
Q |
| |
|
| | ||||||||||||||||||||||||||| |
|
|
| T |
9040513 |
caaaaaaatgaggagtaaatgttgatttttcaagtgtcg |
9040551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 9025193 - 9025416
Alignment:
| Q |
15 |
tgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggaatttcaagcgca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
9025193 |
tgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggagtttctagtgca |
9025292 |
T |
|
| Q |
115 |
gaaggnnnnnnnnctgaacctagccaatgatttaaaag--acaagaggacatatggtgccctcttgaatgcatatgttcattctagatcaaaagagaagg |
212 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9025293 |
gaagg-tttttttctgaacctaaccaatgatttaaaagacacaagaggacgtagggtgccctcttgaatgcatatgttcattctagaacaaaagagaagg |
9025391 |
T |
|
| Q |
213 |
cagaatctttacctgacataatgag |
237 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
9025392 |
cagaatttttactcgacataatgag |
9025416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 1491107 - 1491337
Alignment:
| Q |
15 |
tgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggaatttcaagcgca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
1491107 |
tgattggatgaacaatagaccagagaggtttagaatatctgcaagtgatgttgcgattcagttagatctaatcgcaagagttcacggagtttctagtgca |
1491206 |
T |
|
| Q |
115 |
gaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattctagatcaaaagagaaggca |
214 |
Q |
| |
|
||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
1491207 |
gaaagttttttt-ctgaacctaaccaatgatttaaaagacaagagaacatatggtgccctcttgaatgcatatgttcattctagatcaagagaaaaggca |
1491305 |
T |
|
| Q |
215 |
gaatctttacctgacataatgaggagtaaaag |
246 |
Q |
| |
|
|||||||||| || |||||||||||||||| |
|
|
| T |
1491306 |
gaatctttactcgaagtaatgaggagtaaaag |
1491337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 11831882 - 11831652
Alignment:
| Q |
15 |
tgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttcacggaatttcaagcgca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
11831882 |
tgattggataaacaatagaccagagaggtttagaatatctgcaagtgatgttgcgattcagttagatctaatcgcaagagttcacggagtttctagtgca |
11831783 |
T |
|
| Q |
115 |
gaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattctagatcaaaagagaaggca |
214 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
11831782 |
gaaggttttttt-ctgaacctaaccaatgatttaaaagacaagagaacatacggtgccctcttgaatgcatacgttcattctagatcaagagaaaaggca |
11831684 |
T |
|
| Q |
215 |
gaatctttacctgacataatgaggagtaaaag |
246 |
Q |
| |
|
|||||||||| || |||||||||||||||| |
|
|
| T |
11831683 |
gaatctttactcgaagtaatgaggagtaaaag |
11831652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University