View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17122_low_7 (Length: 271)
Name: NF17122_low_7
Description: NF17122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17122_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 9039958 - 9040155
Alignment:
| Q |
51 |
aaattgttggtcaaatnnnnnnnctgtagcaccattcttatactatcctcttgtaaattccaaaacattgtcagtaaagtttgaataatttagaagtcca |
150 |
Q |
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| T |
9039958 |
aaattgttggtcaaataaaaaaactgtagcaccattcttatactatcctcttgtaaattccaaaacattgtcagtaaagtttgaataatttagaagtcca |
9040057 |
T |
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| Q |
151 |
tttcttctacgattctattaaacagaatgcttccttttgaatgtatatgaaagtatgacatcactcaatgtttctgattaaatatacttccttgtcacaa |
250 |
Q |
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| T |
9040058 |
tttcttctacgattcaattaaacagaatgcttccttttgaatgtatatgaaagtatgacat---------tttctgattaaatatacttccttgccacaa |
9040148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 9024943 - 9025116
Alignment:
| Q |
76 |
gtagcaccattcttatactatcctcttgtaaattccaaa-------acattgtcagtaaagtttgaataatttagaagtccatttcttctacgattctat |
168 |
Q |
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| T |
9024943 |
gtagcaccattcttatactatcctcttgtaaattccagatttgcgaacattttcagtaaagtttgaataatctagaagtccatttcccctacgattctat |
9025042 |
T |
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| Q |
169 |
taaacagaatgcttccttttgaatgtatatgaaagtatgacatcactcaatgtttctgattaaatatacttccttg |
244 |
Q |
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| T |
9025043 |
taaacagaatgcttccttttgaatg--taagaaagtttgacacccttcaatgtttctgattaaatatacttccttg |
9025116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 9035199 - 9035240
Alignment:
| Q |
16 |
atataattcacttgattttatgaattcaattacctaaattgt |
57 |
Q |
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| T |
9035199 |
atataattcacttgattttatgaattcaattacctaaattgt |
9035240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9024889 - 9024922
Alignment:
| Q |
25 |
acttgattttatgaattcaattacctaaattgtt |
58 |
Q |
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| T |
9024889 |
acttgattttatgaattcaattacctaaattgtt |
9024922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 1490858 - 1491038
Alignment:
| Q |
74 |
ctgtagcaccattcttatactatcctcttgtaaattccaaa-----acattgtcagtaaagtttgaataatttagaagtccatttcttctacgattctat |
168 |
Q |
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| T |
1490858 |
ctgtagcaccattcttatactatccacttatcaattccagatttgcaaactgtcagtaaagttt-aagaatctagaagtccatttcccctatgattctat |
1490956 |
T |
|
| Q |
169 |
taaacagaatgcttccttttgaatgtatatgaaagtatgacatcactcaatgtttctgattaaatatacttccttgtcacaaat |
252 |
Q |
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| T |
1490957 |
taaacggaatgcttcctttagaatgtat--gaaagtatgacgtcactcattgtttctgactaagtatacttccttgtctcaaat |
1491038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 11832129 - 11832027
Alignment:
| Q |
119 |
tgtcagtaaagtttgaataatttagaagtccatttcttctacgattctattaaacagaatgcttccttttgaatgtatatgaaagtatgacatcactcaa |
218 |
Q |
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| T |
11832129 |
tgtcagtaaagttt-aataatctagaagtccatttcccctatgattctattaaaaggaatgcttcctttggaatg--tatgaaagtatgacatcactcac |
11832033 |
T |
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| Q |
219 |
tgtttc |
224 |
Q |
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|||||| |
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|
| T |
11832032 |
tgtttc |
11832027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 11832246 - 11832197
Alignment:
| Q |
16 |
atataattcacttgattttatgaattcaattacctaaattgttggtcaaa |
65 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11832246 |
atataattcacttgattttatgaattcaattacctaaactgttggtcaaa |
11832197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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