View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_high_11 (Length: 424)

Name: NF17123_high_11
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_high_11
NF17123_high_11
[»] chr4 (7 HSPs)
chr4 (14-424)||(6019058-6019468)
chr4 (219-338)||(16422337-16422456)
chr4 (220-381)||(44203602-44203764)
chr4 (268-366)||(41389181-41389283)
chr4 (268-390)||(41389294-41389420)
chr4 (313-392)||(44037195-44037276)
chr4 (251-342)||(33818875-33818966)
[»] chr5 (3 HSPs)
chr5 (219-392)||(408183-408356)
chr5 (268-385)||(41485065-41485184)
chr5 (133-199)||(408379-408445)
[»] scaffold0025 (1 HSPs)
scaffold0025 (220-390)||(36852-37022)
[»] chr6 (4 HSPs)
chr6 (219-365)||(16358754-16358901)
chr6 (218-365)||(18849537-18849686)
chr6 (250-388)||(26141533-26141679)
chr6 (250-336)||(26045833-26045920)
[»] scaffold0215 (1 HSPs)
scaffold0215 (219-365)||(24761-24909)
[»] chr8 (3 HSPs)
chr8 (219-365)||(3372107-3372255)
chr8 (219-293)||(9035580-9035654)
chr8 (298-387)||(9035189-9035280)
[»] chr3 (2 HSPs)
chr3 (212-392)||(4477389-4477573)
chr3 (320-386)||(26641423-26641491)
[»] chr2 (2 HSPs)
chr2 (258-367)||(41454863-41454974)
chr2 (250-390)||(13693723-13693865)
[»] chr1 (2 HSPs)
chr1 (219-392)||(35812107-35812283)
chr1 (240-344)||(20990295-20990399)
[»] chr7 (2 HSPs)
chr7 (268-392)||(33164297-33164426)
chr7 (212-344)||(28195313-28195444)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 6019058 - 6019468
Alignment:
Q  14 cagagatatgagctatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019058 cagagatatgagctatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaa 6019157  T
Q  114 atgtcacttgaaagtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaacattnnnnnnnngg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||    
T  6019158 atgtcacttgaaagtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccaaaatacgacaacattaaaaaaaagg 6019257  T
Q  214 tacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019258 tacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaa 6019357  T
Q  314 aagtcgaaatttagagttggttacaacaacagaaactcaaacgcataaataatagtatattgttatattaatgtataagnnnnnnntcacaaatttcatt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  6019358 aagtcgaaatttagagttggttacaacaacagaaactcaaacgcataaataatagtatattgttatattaatgtataagaaaaaaatcacaaatttcatt 6019457  T
Q  414 tcacaatacaa 424  Q
    |||||||||||    
T  6019458 tcacaatacaa 6019468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 16422337 - 16422456
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||| | |||||||| || ||||||||| ||||| ||||||||||| ||||||||||| |||| || |||||| ||||||  |||| |||||||||||    
T  16422337 gtacgttagtaaaatcagaagttttgttatagaatataacatgaaagagttaaattcttcgattcgcagcaaaaaaatcacaatagaagtttaaaaagtc 16422436  T
Q  319 gaaatttagagttggttaca 338  Q
     |||||||||||||||||||    
T  16422437 aaaatttagagttggttaca 16422456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 381
Target Start/End: Original strand, 44203602 - 44203764
Alignment:
Q  220 tacgtcaataaaatcataaattttgttatgg---aatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaag 316  Q
    ||||||||||||||||||| |||||||||     |||| |||||| ||||  |||||||||||| | |||||||||| | ||||  | ||||| ||||||    
T  44203602 tacgtcaataaaatcataagttttgttatactataatataacatggaagagataaattcttcaactgacaacaaaaacagcacaataaaaattaaaaaag 44203701  T
Q  317 tcgaaatttagagttggttacaacaacagaaactcaaacgcataaataatagtatattgttatat 381  Q
    | |||||||||||||||||||||||||  ||| ||||| ||| |||||||  |||||| ||||||    
T  44203702 ttgaaatttagagttggttacaacaac--aaattcaaatgcacaaataatgctatattattatat 44203764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 41389181 - 41389283
Alignment:
Q  268 ttaaattcttcaattcacaacaaaaata--tcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaat 363  Q
    |||||||||||||||||||| ||||| |  |||||  | |||||||||||||||||| | ||||||||||| ||||||  ||||||||||||||||||||    
T  41389181 ttaaattcttcaattcacaaaaaaaaaaactcacaataaaaatttaaaaagtcgaaactaagagttggttataacaacaaagaaactcaaacgcataaat 41389280  T
Q  364 aat 366  Q
    |||    
T  41389281 aat 41389283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 390
Target Start/End: Original strand, 41389294 - 41389420
Alignment:
Q  268 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaac-----agaaactcaaacgcataaa 362  Q
    |||||||||| |||||||||||||||  |||  | |||||||||||||||||||| ||| ||||| ||| ||||||     ||||| |||||| || |||    
T  41389294 ttaaattctttaattcacaacaaaaaattcaggttagaaatttaaaaagtcgaaacttatagttgattataacaacaacaaagaaaatcaaacacaaaaa 41389393  T
Q  363 taatagtatattgttatattaatgtata 390  Q
    ||||| |||||||| |||||||||||||    
T  41389394 taata-tatattgtcatattaatgtata 41389420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 392
Target Start/End: Complemental strand, 44037276 - 44037195
Alignment:
Q  313 aaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatgtataag 392  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || || ||||| | |||||| ||||| |||||||||    
T  44037276 aaagtcgaaatttagagttggttacaacaacaaagaaactcaaacacacaagtaatattgtattgtcatattgatgtataag 44037195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 33818966 - 33818875
Alignment:
Q  251 aatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaa 342  Q
    |||| ||||||| |||  ||||||||||||||  ||||||||| ||||   || ||||||||||||| |||  |||||||||| ||||||||    
T  33818966 aatataacatgagagagctaaattcttcaatttgcaacaaaaacatcaagccaaaaatttaaaaagtagaatattagagttggctacaacaa 33818875  T

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Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 392
Target Start/End: Complemental strand, 408356 - 408183
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  408356 gtacgtcaataaaatcataagttttgttatagaatataacatgaaagaattaaattcttcaattcacaacaaaaaaatcacatcagaagtttaaaaagtc 408257  T
Q  319 gaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatgtataag 392  Q
     ||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  408256 caaatttagagtcggttacaacaacaaagaaactcaaacgcacaaataatagtatattgt--tattaatgtataag 408183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 41485065 - 41485184
Alignment:
Q  268 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataa 365  Q
    |||||||||||||||||| ||||||| ||||||  |||| |||| |||||| ||||||| |||||||||||| |||  |||||||||| |||| ||||||    
T  41485065 ttaaattcttcaattcacgacaaaaaaatcacaatagaagtttacaaagtcaaaatttaaagttggttacaataacaaagaaactcaagcgcacaaataa 41485164  T
Q  366 tagtatattgttatattaat 385  Q
    || || ||||| ||||||||    
T  41485165 tattaaattgtcatattaat 41485184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 408445 - 408379
Alignment:
Q  133 aactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaa 199  Q
    ||||||| |||||||| ||||||| |||| ||||||||||||  |||||||| | |||||||| |||    
T  408445 aactatgttgcataggcacgggtacggtacctggtacgatacaggtactggtacgagaatacggcaa 408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 390
Target Start/End: Complemental strand, 37022 - 36852
Alignment:
Q  220 tacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcg 319  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||  ||||||| |  | |||||||||| |    
T  37022 tacgtcaataaaatcataagttttgttatagaatataacatgaaagagttaaattcttcaattcacaacaaaataatcacattaatagtttaaaaagttg 36923  T
Q  320 aaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatgtata 390  Q
    |||||||||  |||||||||||||  ||||||||||||||| |||||| | |||||| | |||||||||||||    
T  36922 aaatttaga--tggttacaacaacaaagaaactcaaacgcacaaataacattatattatcatattaatgtata 36852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 16358754 - 16358901
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||||||||| || || || ||||||| |||| |||||||||||    
T  16358754 gtacgtcaataaaatcataagttttgttatagaatataacatgaaggagttaaattcttcaattcataa-aagaaaatcacattagaagtttaaaaagtc 16358852  T
Q  319 gaaatttagagttggttacaacaac--agaaactcaaacgcataaataa 365  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  16358853 gaaatttagagttggttacaacaacaaagaaactcaaacgcacaaataa 16358901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 365
Target Start/End: Complemental strand, 18849686 - 18849537
Alignment:
Q  218 agtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagt 317  Q
    ||||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| |    
T  18849686 agtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaatt 18849587  T
Q  318 cgaaatttagagttggttacaacaac--agaaactcaaacgcataaataa 365  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| ||||||    
T  18849586 cgaaatttagagttggttacaacaacaaagaaactcaaatgcacaaataa 18849537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 26141533 - 26141679
Alignment:
Q  250 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta--------caac 340  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||        ||||    
T  26141533 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggttatattaaagcaac 26141632  T
Q  341 aacagaaactcaaacgcataaataatagtatattgttatattaatgta 388  Q
    || ||||||||||| ||| |||||||| |||| ||| |||||||||||    
T  26141633 aa-agaaactcaaatgcacaaataatattatagtgtcatattaatgta 26141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 26045833 - 26045920
Alignment:
Q  250 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta 336  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||    
T  26045833 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggtta 26045920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 24761 - 24909
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  24761 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 24860  T
Q  319 gaaatttagagttggttacaacaac--agaaactcaaacgcataaataa 365  Q
    |||||||||||||||||||||||||  ||||||||| ||||| ||||||    
T  24861 gaaatttagagttggttacaacaacaaagaaactcacacgcacaaataa 24909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 3372107 - 3372255
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  3372107 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 3372206  T
Q  319 gaaatttagagttggttacaaca--acagaaactcaaacgcataaataa 365  Q
    |||||||||||||||||||||||  | ||||||||||| ||| ||||||    
T  3372207 gaaatttagagttggttacaacaataaagaaactcaaatgcacaaataa 3372255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 9035654 - 9035580
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaa 293  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||| |||||||||||||||| |||||||||    
T  9035654 gtacgtcaataaaatcataaattttgttttagaaaataacatgaaagagttaaattcttcaattcccaacaaaaa 9035580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 9035280 - 9035189
Alignment:
Q  298 acatcagaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatgt 387  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||  |||||| |||||  | |||||| | |||||||| ||||||||||    
T  9035280 acattagaagtttaagaagtcgaaatttagagttggttacaacaacaaagaaacgcaaacatacaaataacattatattgtcatattaatgt 9035189  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 392
Target Start/End: Original strand, 4477389 - 4477573
Alignment:
Q  212 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaattta 311  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||| ||||||| |||| ||||    
T  4477389 ggtacatgtacgtcaataaaattataagttttgttatagaatataacatgaaaaagttaaattcttcgattcacaataaaaa-atcacattagaagttta 4477487  T
Q  312 aaaagtcgaaatttagagttggttacaacaac-----agaaactcaaacgcataaataatagtatattgttatattaatgtataag 392  Q
    |||||| ||||  ||||||||| || ||||||     | ||||||||||  | |||||||| |||||||||||||| |||||||||    
T  4477488 aaaagttgaaacatagagttggctaaaacaacaacaaaaaaactcaaacatacaaataatattatattgttatattgatgtataag 4477573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 26641491 - 26641423
Alignment:
Q  320 aaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatg 386  Q
    ||||||||||||||||||||||||  | ||||||||||||| |||||| | |||||||  |||||||||    
T  26641491 aaatttagagttggttacaacaacaaaaaaactcaaacgcacaaataacattatattgccatattaatg 26641423  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 41454974 - 41454863
Alignment:
Q  258 catgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaac 355  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||| |||  |||||||||||     
T  41454974 catgaaagagttaaattcttcgattcacaacaaaaaaatcacaatagaagtttaaaaagtcgaaatttagagttggttacaataacaaagaaactcaaag 41454875  T
Q  356 gcataaataata 367  Q
    ||| ||||||||    
T  41454874 gcacaaataata 41454863  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 13693723 - 13693865
Alignment:
Q  250 gaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaac--agaa 347  Q
    ||||| |||||||| || |||||| ||||||||| ||||||  | ||||||  ||||  |||||||||| ||||||||||||||||||||||||  ||||    
T  13693723 gaatataacatgaatgagttaaatgcttcaattcccaacaaggaaatcacaatagaagattaaaaagtcaaaatttagagttggttacaacaacaaagaa 13693822  T
Q  348 actcaaacgcataaataatagtatattgttatattaatgtata 390  Q
    || |||||||  |||||| | ||||||||  ||||||||||||    
T  13693823 acgcaaacgcgcaaataacattatattgtcctattaatgtata 13693865  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 392
Target Start/End: Original strand, 35812107 - 35812283
Alignment:
Q  219 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 318  Q
    |||||||||||||||||| | |||||||||  |||| ||||||| |||  | |||||||||||| ||||||||||||| ||   | || |||||||||||    
T  35812107 gtacgtcaataaaatcatgagttttgttatataatataacatgagagagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaaagtc 35812206  T
Q  319 gaaatttagagttggttacaacaaca---gaaactcaaacgcataaataatagtatattgttatattaatgtataag 392  Q
    ||||  ||||||||||||||||||||    ||||||||| ||| | | || | |||||||| |||||||| ||||||    
T  35812207 gaaaactagagttggttacaacaacaaataaaactcaaatgcacatacaacactatattgtcatattaatctataag 35812283  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 20990295 - 20990399
Alignment:
Q  240 ttttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttacaa 339  Q
    |||||||||  |||| ||||||| | |  |||||||||||||| |||||||||  |||| |  | || |||||||||| |||| | |||||||||| |||    
T  20990295 ttttgttatataatataacatgagaaagctaaattcttcaatttacaacaaaaccatcataataaaattttaaaaagttgaaaatcagagttggtttcaa 20990394  T
Q  340 caaca 344  Q
    |||||    
T  20990395 caaca 20990399  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 33164297 - 33164426
Alignment:
Q  268 ttaaattcttcaattcacaacaaaaata---tcacatcagaaatttaaaaagtcgaaatttagagttggttacaacaaca--gaaactcaaacgcataaa 362  Q
    ||||||||||| || ||||||||||| |   |||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||| || ||     
T  33164297 ttaaattcttctatccacaacaaaaaaaaaatcacattagaagtttaaaaagtcgaaatttagagttggttacaacaacaacgaaactcaaacacacaag 33164396  T
Q  363 taatagtatattgttatattaatgtataag 392  Q
    ||||| | | |||| ||||| |||||||||    
T  33164397 taatattgttttgtcatattgatgtataag 33164426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 28195444 - 28195313
Alignment:
Q  212 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaat-atcacatcagaaattt 310  Q
    |||||| || |||||| |||||||| | |||||||||  |||| |||||||  ||  |||||||||||| |  |||||||||  ||||||  |||| |||    
T  28195444 ggtacaggtgcgtcaagaaaatcatgagttttgttatataatataacatga--gacctaaattcttcaactttcaacaaaaaacatcacaatagaagttt 28195347  T
Q  311 aaaaagtcgaaatttagagttggttacaacaaca 344  Q
    |||||||||||| |||||||||||||||||||||    
T  28195346 aaaaagtcgaaaattagagttggttacaacaaca 28195313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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