View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_16 (Length: 375)
Name: NF17123_high_16
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 131 - 358
Target Start/End: Original strand, 24313157 - 24313384
Alignment:
| Q |
131 |
taacttcacacgtatcataataataaattaattgttgaattatttatttatttttacacgaatgactatttaacatgttgcatgtattacagattcaaag |
230 |
Q |
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| T |
24313157 |
taacttcacacgaatcatagtaattaattaattgttgaattatttatttatttttacacgaatgactatttaacatattgcatgtattacagattcaaag |
24313256 |
T |
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| Q |
231 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctaccccttttcaatttgaaaaatcaacatgattttctacaaagcatagctaaaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||| ||||| |
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| T |
24313257 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctacccctttttaatttgacaaatcaatatgattttttacaaagcataggtaaaa |
24313356 |
T |
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| Q |
331 |
cactttcaataacacctttgggtgttat |
358 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24313357 |
cactttcaataacacctttgggtgttat |
24313384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 24312929 - 24313028
Alignment:
| Q |
26 |
atagatatatcctcccgaaagattcctcatgtttaattagcttgaagtggcttttttctgttcacattcacgctcaagaaaatgatatcataaccataaa |
125 |
Q |
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||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24312929 |
atagatacatcctcccgaaagattcctcatgtttaatgaccttgaagtagcttttttctgttcacattcacgctcaagaaaatgataccataaccataaa |
24313028 |
T |
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