View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_high_2 (Length: 641)

Name: NF17123_high_2
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_high_2
NF17123_high_2
[»] chr4 (2 HSPs)
chr4 (12-623)||(46451986-46452597)
chr4 (305-443)||(2887368-2887506)
[»] chr2 (3 HSPs)
chr2 (225-442)||(44210551-44210768)
chr2 (225-442)||(44233573-44233790)
chr2 (225-442)||(44222751-44222968)
[»] chr7 (8 HSPs)
chr7 (227-441)||(39547078-39547292)
chr7 (227-345)||(39563709-39563827)
chr7 (227-420)||(39537613-39537806)
chr7 (227-372)||(39339098-39339243)
chr7 (308-435)||(42132659-42132786)
chr7 (228-444)||(42153550-42153766)
chr7 (227-273)||(39366620-39366666)
chr7 (226-462)||(39574322-39574558)
[»] chr3 (2 HSPs)
chr3 (227-414)||(25522821-25523008)
chr3 (227-443)||(49773527-49773743)
[»] chr1 (1 HSPs)
chr1 (226-276)||(2148394-2148444)


Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 12 - 623
Target Start/End: Complemental strand, 46452597 - 46451986
Alignment:
Q  12 acagagacttgtatatacgaaagatacatgtattgttacatatccaaaagaataaaatagagagaaattgtggtataacaacatacataacataacagta 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452597 acagaaacttgtatatacgaaagatacatgtattgttacatatccaaaagaataaaatagagagaaattgtggtataacaacatacataacataacagta 46452498  T
Q  112 tcaacataaaagcaagcaaggggaagggatggagcggcgatgtttcctactattagacaacttcaaattctcaattttaaatgaaatgcttgtaatgccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452497 tcaacataaaagcaagcaaggggaagggatggagcggcgatgtttcctactattagacaacttcaaattctcaattttaaatgaaatgcttgtaatgccc 46452398  T
Q  212 tctcttaaggaaaatacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452397 tctcttaaggaaaatacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctca 46452298  T
Q  312 cagttctcatcacaatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452297 cagttctcatcacaatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagt 46452198  T
Q  412 caacctttttcgttgttctgttgacagaccatcaactccagggagaccaactagtgctccacttagtggtgtgagctctaccagctccattatctccccg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46452197 caacctttttcgttgttctgttgacagaccatcaactccagggagaccaactagtgctccacttagtggtgtgagctctaccagctccattatctcctcg 46452098  T
Q  512 acaaatgcctggcaatcaaaaccctcgagaagttattttttgataaaaaatgttaaaatacatgtctctataaaatgcagaatggccatactgtcgtttg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452097 acaaatgcctggcaatcaaaaccctcgagaagttattttttgataaaaaatgttaaaatacatgtctctataaaatgcagaatggccatactgtcgtttg 46451998  T
Q  612 tctccatgcctc 623  Q
    ||||||||||||    
T  46451997 tctccatgcctc 46451986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 443
Target Start/End: Complemental strand, 2887506 - 2887368
Alignment:
Q  305 ttcctcacagttctcatcacaatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactg 404  Q
    ||||| || |||| ||| ||||| || ||||| |||||||| ||||| || || |||||||||||||| |  || || || ||||| |||| ||| ||||    
T  2887506 ttcctaacggttcgcataacaattgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactg 2887407  T
Q  405 ctatagtcaacctttttcgttgttctgttgacagaccat 443  Q
    | ||||| | ||| || |||||||| ||||| |||||||    
T  2887406 caatagttagcctcttgcgttgttcggttgaaagaccat 2887368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 442
Target Start/End: Original strand, 44210551 - 44210768
Alignment:
Q  225 atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcac 324  Q
    ||||||||||||| | |||||||||||| |||||||| ||||||||||| || ||||  ||||  || || |  ||  | ||||| ||||||||||| ||    
T  44210551 atacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataac 44210650  T
Q  325 aatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgt 424  Q
    ||| || ||||| |||||||| || || || || || ||||||||||| |  || || || || || |||||||| ||||| |||||||||||||| |||    
T  44210651 aattgcagcagctctagcatctaaaccagaagttggttcatccatgaaaattatggacggattagccactagttcaactgcaatagtcaaccttttacgt 44210750  T
Q  425 tgttctgttgacagacca 442  Q
    ||||| ||||| ||||||    
T  44210751 tgttccgttgagagacca 44210768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 442
Target Start/End: Original strand, 44233573 - 44233790
Alignment:
Q  225 atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcac 324  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||| || ||||  ||||  || || |  ||  | ||||| ||||||||||| ||    
T  44233573 atacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataac 44233672  T
Q  325 aatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgt 424  Q
    ||| || ||||| |||||||| || || || || ||||||||||| || |  ||||| || || || || ||||| ||||| |||||||  || || ||     
T  44233673 aattgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagccacaagttcaactgcaatagtcagtctcttgcgc 44233772  T
Q  425 tgttctgttgacagacca 442  Q
    ||||| ||||| ||||||    
T  44233773 tgttcagttgagagacca 44233790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 442
Target Start/End: Original strand, 44222751 - 44222968
Alignment:
Q  225 atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcac 324  Q
    ||||||||||||| | |||||||||||| |||||||| ||||||||||| || ||||  ||||  || || |  ||  | ||||| ||||||| ||| ||    
T  44222751 atacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcccgtgtccactgtgttccttacagttcgcataac 44222850  T
Q  325 aatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgt 424  Q
    ||| || || || |||||||| || || || || |||||||||||||| |  ||||| || || || || ||||| ||||| |||||||  || || ||     
T  44222851 aattgcagccgctctagcatctaaaccagaagtaggctcatccatgaaaattatagatggattagccacaagttcgactgcaatagtcagtctcttgcgc 44222950  T
Q  425 tgttctgttgacagacca 442  Q
    ||||| ||||| ||||||    
T  44222951 tgttcagttgagagacca 44222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 441
Target Start/End: Original strand, 39547078 - 39547292
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| ||||||||||| || ||||||||||| |||||||| || ||||  ||||  || || | |||  | ||||| || |||||||| ||||    
T  39547078 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcataacaa 39547177  T
Q  327 tggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgttg 426  Q
    | |||||||| || ||||| | ||| || || |||||||||||||| |  |||||||| || ||||| |  || ||||| ||||||| |||||| || ||    
T  39547178 tagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgctg 39547277  T
Q  427 ttctgttgacagacc 441  Q
     || ||||| |||||    
T  39547278 ctccgttgagagacc 39547292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 39563709 - 39563827
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||  ||||  ||||| |||||  | ||||| || |||||||||||||    
T  39563709 acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa 39563808  T
Q  327 tggctgcagccctagcatc 345  Q
    | ||||||||||| |||||    
T  39563809 tagctgcagcccttgcatc 39563827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 420
Target Start/End: Original strand, 39537613 - 39537806
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| ||||||||||| || |||||||| || || ||||| || ||||  ||||  ||||| | |||  | ||||| || |||||||| ||||    
T  39537613 acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39537712  T
Q  327 tggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttt 420  Q
    | ||||||||||| ||||| | ||| || || |||||||||||||| |  |||||||| || ||||| |  || ||||| ||||||| ||||||    
T  39537713 tagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagcctttt 39537806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 372
Target Start/End: Complemental strand, 39339243 - 39339098
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||  ||||  ||||| | |||  | ||||| || |||||||| ||||    
T  39339243 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39339144  T
Q  327 tggctgcagccctagcatccaatccggacgtgggctcatccatgaa 372  Q
    | ||||||||||| ||||| |  || || || ||||||||||||||    
T  39339143 tagctgcagcccttgcatctagcccagaagttggctcatccatgaa 39339098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 42132659 - 42132786
Alignment:
Q  308 ctcacagttctcatcacaatggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgcta 407  Q
    |||||||||| |||||||||||| || || |||||||| |  || || || || |||||||||||||  || |||||||| ||||| | |||||| || |    
T  42132659 ctcacagttcgcatcacaatggcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggttagcaaccaattccacagcaa 42132758  T
Q  408 tagtcaacctttttcgttgttctgttga 435  Q
    |||| | |||||| | ||||||||||||    
T  42132759 tagtaagccttttcctttgttctgttga 42132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 444
Target Start/End: Original strand, 42153550 - 42153766
Alignment:
Q  228 cctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaat 327  Q
    |||||||||| | |||||| |||||||| || || ||||| || ||||| ||||  |||| ||| |||| |||  |||| ||||| |||| ||| || ||    
T  42153550 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctgtatctactgtatttctcacggttcgcataacgat 42153649  T
Q  328 ggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgttgt 427  Q
     || || || |||||||| |  || || || || |||||||||||||  || |||||||||||||| || || || || ||||| | ||| || | ||||    
T  42153650 tgcagcggctctagcatcgaggcctgatgttggttcatccatgaagatgattgaagggttggcaacaagctctacagcaatagtaagcctcttcctttgt 42153749  T
Q  428 tctgttgacagaccatc 444  Q
    |||||||| ||||||||    
T  42153750 tctgttgatagaccatc 42153766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 39366666 - 39366620
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggt 273  Q
    ||||||||||| ||||||||||| || ||||||||||| ||||||||    
T  39366666 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggt 39366620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 462
Target Start/End: Original strand, 39574322 - 39574558
Alignment:
Q  226 tacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcaca 325  Q
    ||||||||| || |||||||| || || ||||| ||||| || ||||| || ||||| ||||  ||||| |  || || ||||| || | |||||| |||    
T  39574322 tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccagtgtccactatgttcctaactgctctcataaca 39574421  T
Q  326 atggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgtt 425  Q
    || |||||||| || ||||| || || || || |||||||||||||| |  |||||||| ||    || ||||| ||||| |||||||| ||||| || |    
T  39574422 atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgct 39574521  T
Q  426 gttctgttgacagaccatcaactccagggagaccaac 462  Q
    | || ||||| ||||| | ||  || |||||||||||    
T  39574522 gctcagttgatagaccgttaatacctgggagaccaac 39574558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 414
Target Start/End: Original strand, 25522821 - 25523008
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| | ||||||||| || || || |||||||| ||||| || || |  ||||  |||||||  ||| |||| |  ||||||||||| ||||    
T  25522821 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcaacagtattgcgaacagttctcataacaa 25522920  T
Q  327 tggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaa 414  Q
    |||| || || |  ||||| | |||||| || || |||||||||||||  ||||||||||| || || |||||||||||||| |||||    
T  25522921 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaa 25523008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 443
Target Start/End: Complemental strand, 49773743 - 49773527
Alignment:
Q  227 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 326  Q
    ||||||||||| |  |||||||| || || ||||||||||| || ||||||||||  |||| ||| || |  ||  |||||||||| |||||||| || |    
T  49773743 acctcatcaaaagcatcaaatatatcaatactaggctgatgaattgtgcagacaacagttctccctgtgtccactgtattcctcactgttctcattacta 49773644  T
Q  327 tggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaacctttttcgttg 426  Q
    | || ||||| || ||||| |  || || || || ||||||||||| |  ||||| || |||||||| ||||| ||||| || || ||||| || || ||    
T  49773643 tagcagcagctcttgcatcaaggccagaggtaggttcatccatgaatataatagatggattggcaacaagttcaactgcaatcgttaacctcttgcgctg 49773544  T
Q  427 ttctgttgacagaccat 443  Q
    |||||| ||||||||||    
T  49773543 ttctgtggacagaccat 49773527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 2148394 - 2148444
Alignment:
Q  226 tacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgca 276  Q
    ||||||||||||||| ||||||||||| || || ||||||||||| |||||    
T  2148394 tacctcatcaaaggaatcaaatatgtcaatactcggctgatggatcgtgca 2148444  T

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