View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_high_20 (Length: 353)

Name: NF17123_high_20
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_high_20
NF17123_high_20
[»] chr3 (5 HSPs)
chr3 (79-338)||(52366414-52366677)
chr3 (1-79)||(38337429-38337507)
chr3 (7-74)||(38336967-38337034)
chr3 (5-72)||(44022043-44022110)
chr3 (4-66)||(15450256-15450318)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-78)||(12811-12888)
scaffold0189 (1-79)||(12202-12280)
[»] chr1 (14 HSPs)
chr1 (1-73)||(14925294-14925366)
chr1 (1-79)||(11469717-11469795)
chr1 (1-79)||(11469099-11469177)
chr1 (3-74)||(31787501-31787572)
chr1 (1-74)||(31788228-31788301)
chr1 (1-79)||(14924692-14924770)
chr1 (2-68)||(7464023-7464089)
chr1 (2-68)||(11426882-11426948)
chr1 (2-68)||(11427460-11427526)
chr1 (2-68)||(7463444-7463510)
chr1 (2-68)||(37889908-37889974)
chr1 (2-68)||(37890486-37890552)
chr1 (2-70)||(2687680-2687748)
chr1 (90-138)||(43275804-43275852)
[»] chr5 (3 HSPs)
chr5 (1-70)||(4554684-4554753)
chr5 (1-79)||(4555341-4555419)
chr5 (2-68)||(6805910-6805976)
[»] chr8 (9 HSPs)
chr8 (3-74)||(39257657-39257728)
chr8 (3-74)||(43971301-43971372)
chr8 (1-79)||(12350606-12350684)
chr8 (1-79)||(12349985-12350063)
chr8 (5-79)||(43924508-43924582)
chr8 (1-74)||(43972038-43972111)
chr8 (1-79)||(43924970-43925048)
chr8 (1-67)||(38686333-38686399)
chr8 (1-43)||(38687007-38687049)
[»] chr4 (11 HSPs)
chr4 (1-79)||(6247422-6247501)
chr4 (1-79)||(10421533-10421611)
chr4 (1-79)||(6246802-6246880)
chr4 (1-51)||(10420963-10421013)
chr4 (3-79)||(15481524-15481600)
chr4 (2-74)||(15481058-15481130)
chr4 (2-61)||(2093865-2093924)
chr4 (1-43)||(13856645-13856687)
chr4 (90-144)||(37306433-37306487)
chr4 (1-63)||(53664246-53664308)
chr4 (1-37)||(50709719-50709755)
[»] chr2 (12 HSPs)
chr2 (3-74)||(4993627-4993698)
chr2 (3-74)||(4975719-4975790)
chr2 (1-74)||(4976457-4976530)
chr2 (1-74)||(4994364-4994437)
chr2 (85-144)||(34142236-34142295)
chr2 (1-67)||(8536167-8536233)
chr2 (1-79)||(41519877-41519955)
chr2 (1-38)||(42369702-42369739)
chr2 (29-73)||(1271255-1271299)
chr2 (92-144)||(27183781-27183833)
chr2 (92-144)||(27833323-27833375)
chr2 (1-73)||(42370902-42370974)
[»] chr6 (3 HSPs)
chr6 (1-74)||(27763436-27763509)
chr6 (90-128)||(10067283-10067321)
chr6 (85-149)||(4595766-4595830)
[»] chr7 (4 HSPs)
chr7 (1-72)||(46757449-46757520)
chr7 (84-144)||(29310443-29310503)
chr7 (90-144)||(41873463-41873517)
chr7 (96-144)||(32377291-32377339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (4-66)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (29-73)||(29938-29982)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 79 - 338
Target Start/End: Complemental strand, 52366677 - 52366414
Alignment:
Q  79 tttatgaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttttatgaaattcattcttaatgtgtgagaaagtaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52366677 tttatgaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttatatgaaattcattcttaatgtgtgagaaagtaa 52366578  T
Q  179 tgacaacttaacaatttagaagtcagtatagtaatatacaaactcata-ttttggc---aatagtattgagaagaaaaaataaaccaattatttactttt 274  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||    
T  52366577 tgaaaacttaacaatttagaagtcagtataataatatacaaactcatatttttggcaataatagtattgagaagaaaaaataaaccaattatttaatttt 52366478  T
Q  275 atttgtttttgcttcataaaagctcatatatatcaaaagctgtttgcattaaagatagctatct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52366477 atttgtttttgcttcataaaagctcatatatatcaaaagctgtttgcattaaagatagctatct 52366414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38337429 - 38337507
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| ||||||||||| || |||||| | |||||||||| ||||||||||||| |||||||||| ||||    
T  38337429 tgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttt 38337507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 38337034 - 38336967
Alignment:
Q  7 tgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||| ||||||||||| || |||||| | |||||||||| ||||||||||||| ||||||||||    
T  38337034 tgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttc 38336967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 44022043 - 44022110
Alignment:
Q  5 tatgataaaagtatgttctctagttta-tctaatgatcaaaattagttttcccatggtggaaaacaact 72  Q
    |||||||||||||||||| |||||||| ||||||| ||||| ||  |||||||||||||||||||||||    
T  44022043 tatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 15450318 - 15450256
Alignment:
Q  4 ctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaa 66  Q
    ||||||||||| ||||||||||| || |||||||| |||| ||||  ||||||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 15450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12811 - 12888
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcactt 78  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||    
T  12811 tgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcactt 12888  T

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Target: scaffold0189; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12280 - 12202
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| ||||||||||| || |||||| | ||||||||| ||||| |||||||| |||||||||| ||||    
T  12280 tgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctcttt 12202  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14925294 - 14925366
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaactt 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  14925294 tgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactt 14925366  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11469717 - 11469795
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  11469717 tgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttcccttt 11469795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11469177 - 11469099
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||| |||||||||| ||||    
T  11469177 tgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttcccttt 11469099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 31787572 - 31787501
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||||||||    
T  31787572 tctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttc 31787501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31788228 - 31788301
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||| ||||||||||||||||| ||||||||||| | |||||||  ||||||||||||| ||||||||||    
T  31788228 tgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttc 31788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 14924770 - 14924692
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| ||||||||||| || || ||| | |||||||||| ||||||||||||| |||||||||| ||||    
T  14924770 tgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttcccttt 14924692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 7464023 - 7464089
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||  | |||||||||||| |||| ||| |||||||||||||||||||||||| ||||    
T  7464023 gtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 11426948 - 11426882
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||| | |||||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  11426948 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 11427460 - 11427526
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||  | |||||||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  11427460 gtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtagaaaac 11427526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 7463510 - 7463444
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||| | |||||| || || |||||||| |||||||||| ||||||||||||| ||||    
T  7463510 gtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||| | |||||| ||||| |||||||| |||||||| | ||||||||||||| ||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 37890486 - 37890552
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||  | |||||||| ||| |||| ||| |||||||||||||||||||||| ||||||    
T  37890486 gtctatgataaagttgtgttctcttgttaatctgatggtcaaaattagttttcccatggtagaaaac 37890552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 2687680 - 2687748
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaa 70  Q
    ||||||||||||| |||||||  ||||| ||||||   |||||| || |||||||||||||| ||||||    
T  2687680 gtctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaa 2687748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 43275804 - 43275852
Alignment:
Q  90 tctctctaacattcacttttttattgagtaaaactcatgtaggtctcac 138  Q
    |||||| |||| ||||||||||||||||| ||| |||||| ||||||||    
T  43275804 tctctccaacactcacttttttattgagtgaaattcatgtgggtctcac 43275852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4554753 - 4554684
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaa 70  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||    
T  4554753 tgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaa 4554684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4555341 - 4555419
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||| ||||||||||||||||| | |||||| || | |||||||||| ||||||||||| | |||||||||| ||||    
T  4555341 tgtctacgataaaagtatgttctccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttcccttt 4555419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 6805910 - 6805976
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaac 68  Q
    ||||||||||||| |||||||| | ||  |||| ||| | |||||||||||||||||||||| ||||    
T  6805910 gtctatgataaaattatgttcttttgtaaatctgatggttaaaattagttttcccatggtgggaaac 6805976  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 39257728 - 39257657
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||||||||    
T  39257728 tctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 39257657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 43971372 - 43971301
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||||||||    
T  43971372 tctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12350606 - 12350684
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||| |||||| ||| ||||    
T  12350606 tgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttcccttt 12350684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12350063 - 12349985
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    ||||||||||||||| ||||||| || ||||||||||| | |||||||||||| ||||||||| |||||||||| ||||    
T  12350063 tgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttcccttt 12349985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 43924582 - 43924508
Alignment:
Q  5 tatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||| ||||||||||| || |||||| | |||||||||| ||||||||||||| |||||||||| ||||    
T  43924582 tatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttt 43924508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 43972038 - 43972111
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||| ||||||||||||||||| ||||||||||| | |||||||  |||||||| |||| ||||||||||    
T  43972038 tgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43924970 - 43925048
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| ||||||||||| || |||||| | |||||||||  |||| |||||||| |||||||||| ||||    
T  43924970 tgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttcccttt 43925048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38686399 - 38686333
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaa 67  Q
    ||||||||||||||  |||||||||| ||||||||||| |||| |||   |||||||||||||||||    
T  38686399 tgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaa 38686333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38687007 - 38687049
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaa 43  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  38687007 tgtctatgataaaatcatgttctctactttatctaatgatcaa 38687049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6247422 - 6247501
Alignment:
Q  1 tgtctatgataaaa-gtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  6247422 tgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttcccttt 6247501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10421533 - 10421611
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||||| ||||||||||| || |||||| | |||||||||| |||||||||||||||||||||||| ||||    
T  10421533 tgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttcccttt 10421611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6246880 - 6246802
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||  ||||||||||||| |||||| ||| ||||    
T  6246880 tgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttcccttt 6246802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10421013 - 10420963
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagtt 51  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  10421013 tgtctatgataaaagtatgttatctagtttatctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 15481524 - 15481600
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||||||| ||||||||||| || |||||  | ||||||||||||||||||| |||| |||||||||| ||||    
T  15481524 tctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttcccttt 15481600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 15481130 - 15481058
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    ||||||||||||| ||||||||||| || |||||| | |||||||||| |||||||||  || ||||||||||    
T  15481130 gtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttc 15481058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2093865 - 2093924
Alignment:
Q  2 gtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggt 61  Q
    |||||||||||||||||||||| || || ||||||||||||| | ||  |||||||||||    
T  2093865 gtctatgataaaagtatgttctatatttgatctaatgatcaataataactttcccatggt 2093924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaa 43  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 37306433 - 37306487
Alignment:
Q  90 tctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||||| ||||| || ||||| || |||||||||| ||||||||||||||    
T  37306433 tctctctaacactcactcttatattgggtgaaactcatgtgggtctcaccacttt 37306487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53664308 - 53664246
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtgg 63  Q
    ||||||||||||||  |||||||||| ||||||||||| |||| |||   |||||||||||||    
T  53664308 tgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgg 53664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50709755 - 50709719
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaat 37  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  50709755 tgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 4993698 - 4993627
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||||||||||||||||||    
T  4993698 tctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttc 4993627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 4975790 - 4975719
Alignment:
Q  3 tctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||||||| ||||||||||    
T  4975790 tctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttc 4975719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4976457 - 4976530
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||| ||||||||||||||||| ||||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4976457 tgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4994364 - 4994437
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    |||||||| ||||||||||||||||| ||||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4994364 tgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 34142295 - 34142236
Alignment:
Q  85 aacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||||| |||||||||||||||||||  | ||| ||||||| ||||||| |||||    
T  34142295 aacaatctctcaaacattcacttttttattggatgaaattcatgtatgtctcactacttt 34142236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8536233 - 8536167
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaa 67  Q
    ||||||||||||||  |||||||||| ||||||||||  |||| |||   |||||||||||||||||    
T  8536233 tgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaa 8536167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 41519877 - 41519955
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttcacttt 79  Q
    |||||||| ||||||||||||||||| ||||| ||| | ||||||  |  ||||||||||||| ||| |||||| ||||    
T  41519877 tgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttcccttt 41519955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42369739 - 42369702
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatg 38  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  42369739 tgtctatgataaaattatgttctctactttatctaatg 42369702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 1271299 - 1271255
Alignment:
Q  29 ttatctaatgatcaaaattagttttcccatggtggaaaacaactt 73  Q
    |||||||| | | ||||||||||||||||| ||||||||||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 1271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 27183781 - 27183833
Alignment:
Q  92 tctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||| ||||| || | |||| | |||||||||||||||||||||||||    
T  27183781 tctctaacactcactcttattttgattgaaactcatgtaggtctcaccacttt 27183833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 27833323 - 27833375
Alignment:
Q  92 tctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||| ||||| || | |||| | |||||||||||||||||||||||||    
T  27833323 tctctaacactcactcttattttgattgaaactcatgtaggtctcaccacttt 27833375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42370902 - 42370974
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaactt 73  Q
    |||||||||||||| ||| ||||| | |||||||||||  ||| |||   ||||||||||||| |||||||||    
T  42370902 tgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactt 42370974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27763509 - 27763436
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaacttc 74  Q
    ||||| |||||||| ||||||||||| || |||||| | ||||||||||||||||| |||||| ||||||||||    
T  27763509 tgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttc 27763436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 10067283 - 10067321
Alignment:
Q  90 tctctctaacattcacttttttattgagtaaaactcatg 128  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10067283 tctctctaacaatcacttttttattgaataaaactcatg 10067321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 4595766 - 4595830
Alignment:
Q  85 aacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttttatg 149  Q
    |||| |||||||| || ||||| ||||||||||| |||   ||||| ||||||||||||||||||    
T  4595766 aacactctctctagcactcactcttttattgagtgaaatcaatgtatgtctcaccactttttatg 4595830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 46757520 - 46757449
Alignment:
Q  1 tgtctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaaacaact 72  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| |||   |||| |||||||||||||||||    
T  46757520 tgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaact 46757449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 29310443 - 29310503
Alignment:
Q  84 gaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||| ||| ||||||| |||||||||||||| || |||||||||| ||||||||||||||    
T  29310443 gaacactctttctaacactcacttttttattgggtgaaactcatgtgggtctcaccacttt 29310503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 41873463 - 41873517
Alignment:
Q  90 tctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||||| |||||||||||||| || ||||||||||  |||||| ||||||    
T  41873463 tctctctaacactcacttttttattgggtgaaactcatgtgagtctcatcacttt 41873517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 32377291 - 32377339
Alignment:
Q  96 taacattcacttttttattgagtaaaactcatgtaggtctcaccacttt 144  Q
    ||||||||||||||||||||  ||||| | |||||||||| ||||||||    
T  32377291 taacattcacttttttattggataaaatttatgtaggtcttaccacttt 32377339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 11873 - 11935
Alignment:
Q  4 ctatgataaaagtatgttctctagtttatctaatgatcaaaattagttttcccatggtggaaa 66  Q
    ||||||||||| ||||||||||| || |||||||| |||| ||||  ||||||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 29938 - 29982
Alignment:
Q  29 ttatctaatgatcaaaattagttttcccatggtggaaaacaactt 73  Q
    |||||||| | | ||||||||||||||||| ||||||||||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 29982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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