View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_28 (Length: 294)
Name: NF17123_high_28
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 44677184 - 44676905
Alignment:
| Q |
15 |
aatataatatgatatgtttttgtcgaagtggtttaaagtaacc--caaccaaaacatattaatgctgtcatgtcaaacaaatggtttcttctgcaatcta |
112 |
Q |
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| T |
44677184 |
aatataatatgatatgtttttgtcgaagtggtttaaagtaatgttcaacctcttg-tattaatgctgtcatgtcaaacaaatggtttcttctgcaatcta |
44677086 |
T |
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| Q |
113 |
aatgcgccttgccactgtcaccaaaaagaaaaatagaagaagctcttttgtcatagt---------------attttgcttcaatttgaacaaattacaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44677085 |
aatgcgccttgccactgtcaccaaaaagaaaaatagaagaagctcttttgtcatagtgttttctccttgtgtattttgcttcaatttgaacaaattacaa |
44676986 |
T |
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| Q |
198 |
aattcccataaataaaggaatagactagaaaatgaaatgacatagttttttggcaattggtaatttcaggtggtccttgat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44676985 |
aattcccataaataaaggaatagactagaaaatgaaatgacaaagttttttggcaattggtaatttcaggtggtccttgat |
44676905 |
T |
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