View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_30 (Length: 253)
Name: NF17123_high_30
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 29204525 - 29204283
Alignment:
| Q |
14 |
tatactcaaaggatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatgatgatctactac---gttcaaatg |
110 |
Q |
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| T |
29204525 |
tatactcaaaggatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatgatgatctactactacgttcaaatg |
29204426 |
T |
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| Q |
111 |
acagagtgttggactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccgttagaaatagacccaaaagca |
210 |
Q |
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| T |
29204425 |
acagagtgttggactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccgttagaaatagacccaaaagca |
29204326 |
T |
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| Q |
211 |
tatgtttctctatataacaactggatgcaacacaagagttgtc |
253 |
Q |
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| T |
29204325 |
tatgtttctctatataacaactagatgcaacacaagagttgtc |
29204283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 29196009 - 29196171
Alignment:
| Q |
90 |
atgatctactacgttcaaatgacagagtgttggactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccg |
189 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||| | ||||||||| |||| |
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| T |
29196009 |
atgatcgactatgttcaaatgacagagtgttggacaagttatgtttaagtcagaatcaaatttgcagttgttaagtgtgaggtctgcaagattgacgccg |
29196108 |
T |
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| Q |
190 |
ttag-aaatagacccaaaagcatatgtttctctatataacaactggatgcaacacaagagttgtc |
253 |
Q |
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| T |
29196109 |
ttagaaaataaacccaaaagcatatgtttttc--tataacaactagatgcaacacaagagttgtc |
29196171 |
T |
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