View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17123_high_33 (Length: 250)
Name: NF17123_high_33
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 12548066 - 12547843
Alignment:
| Q |
27 |
tctacatattatactataagaaggcatattcaaagccaaacccaactagttaagtaataattactacaattaacaaaattattaattttcttaatggtat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12548066 |
tctacatattatactataagaaggcatattcaaagccaaacccaactagttaagtaataattactacaattaacaaaattattaattttcttaatggtat |
12547967 |
T |
|
| Q |
127 |
tgttattgggatccatgtcaagaggaatattatttgcttaaatgagagtgacacttccatagtttctttgttctttttgtcaaaaagataagcgggttta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547966 |
tgttattgggatccatgtcaagaggaatattatttgcttaaatgagagtgacacttccatagtttctttgttctttttgtcaaaaagataagcgggttta |
12547867 |
T |
|
| Q |
227 |
taggatcagtggggttgacatttc |
250 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
12547866 |
taggatccgtggggttgacatttc |
12547843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University