View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17123_high_35 (Length: 249)

Name: NF17123_high_35
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17123_high_35
NF17123_high_35
[»] chr1 (11 HSPs)
chr1 (1-128)||(14443453-14443580)
chr1 (128-239)||(14443603-14443714)
chr1 (4-48)||(27820356-27820400)
chr1 (4-42)||(3234040-3234078)
chr1 (4-105)||(34290243-34290344)
chr1 (69-114)||(37517118-37517163)
chr1 (4-92)||(7136973-7137061)
chr1 (4-48)||(37631578-37631622)
chr1 (4-48)||(45975697-45975741)
chr1 (4-48)||(49938754-49938798)
chr1 (4-48)||(51695514-51695558)
[»] chr5 (4 HSPs)
chr5 (1-113)||(35445797-35445909)
chr5 (7-48)||(12857724-12857765)
chr5 (4-48)||(37954693-37954737)
chr5 (10-42)||(42569476-42569508)
[»] chr8 (4 HSPs)
chr8 (5-113)||(27754412-27754520)
chr8 (4-41)||(30657798-30657835)
chr8 (21-65)||(4281570-4281614)
chr8 (69-113)||(10758210-10758254)
[»] chr2 (6 HSPs)
chr2 (11-88)||(12313152-12313229)
chr2 (4-115)||(43279478-43279592)
chr2 (4-57)||(9877949-9878002)
chr2 (4-48)||(20952362-20952406)
chr2 (4-48)||(26202035-26202079)
chr2 (4-48)||(40279414-40279458)
[»] chr7 (7 HSPs)
chr7 (4-88)||(19022563-19022648)
chr7 (4-65)||(7244687-7244748)
chr7 (69-114)||(27863677-27863722)
chr7 (10-83)||(43250683-43250756)
chr7 (4-48)||(11619177-11619221)
chr7 (63-107)||(27288014-27288058)
chr7 (4-40)||(46280299-46280335)
[»] chr6 (4 HSPs)
chr6 (4-89)||(31624097-31624182)
chr6 (4-48)||(6536622-6536666)
chr6 (4-113)||(20368134-20368243)
chr6 (7-48)||(30536520-30536561)
[»] chr4 (6 HSPs)
chr4 (4-48)||(21731675-21731719)
chr4 (5-48)||(29388622-29388665)
chr4 (4-42)||(437269-437307)
chr4 (10-48)||(2244064-2244102)
chr4 (30-88)||(28300278-28300336)
chr4 (4-41)||(9760447-9760484)
[»] chr3 (7 HSPs)
chr3 (4-48)||(901931-901975)
chr3 (4-48)||(39980736-39980780)
chr3 (4-48)||(47132338-47132382)
chr3 (4-107)||(39602170-39602273)
chr3 (4-116)||(21367674-21367787)
chr3 (4-48)||(30443900-30443944)
chr3 (4-48)||(35696245-35696289)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14443453 - 14443580
Alignment:
Q  1 aggtgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14443453 aggtgtttttataagctacattggagaatttatgaaaataaggtgaaaacaacttacgaacatgttaaaagctgttttcataaattctttcatatagtct 14443552  T
Q  101 cacaaaatttatgctgattgattagctc 128  Q
    ||||||||||||||||||||||||||||    
T  14443553 cacaaaatttatgctgattgattagctc 14443580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 14443603 - 14443714
Alignment:
Q  128 cattgtaaactttaatatcttccaattttttgttttacctcccctttccattattcatgttttcactctaattaattcatcttgaagtgagtaacacaga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14443603 cattgtaaactttaatatcttccaattttttgttttacctcccctttccattattcatgttttcactctaattaattcatcttgaagtgagtaacacaga 14443702  T
Q  228 tcattaattcat 239  Q
    ||||||||||||    
T  14443703 tcattaattcat 14443714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 27820400 - 27820356
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||||||||||  |||||||||||||||||||||| |||||    
T  27820400 tgtttttataagctatcttggagaatttatgaaaataagctgaaa 27820356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 3234078 - 3234040
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataag 42  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  3234078 tgtttttataagctatattggagaacttatgaaaataag 3234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 34290243 - 34290344
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtctcac 103  Q
    |||||| ||||||||  ||| |||| ||||||||||||| ||||| ||||||| ||  |||| | ||||| |||| |||||||||  || ||||| ||||    
T  34290243 tgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataagcttttttaataaattctcccaaatagtttcac 34290342  T
Q  104 aa 105  Q
    ||    
T  34290343 aa 34290344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 37517163 - 37517118
Alignment:
Q  69 aagctgttttcataaattctttcatatagtctcacaaaatttatgc 114  Q
    ||||||||||| ||| |||||||||| |||||||||||| ||||||    
T  37517163 aagctgttttcgtaagttctttcatacagtctcacaaaacttatgc 37517118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7137061 - 7136973
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttca 92  Q
    |||||| ||||||||  |||||||| ||||||||||||| |||||  |||||| ||  |||| | ||||  ||||||||| ||||||||    
T  7137061 tgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttctttca 7136973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 37631622 - 37631578
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  37631622 tgtttttgtaagctatattggagaacttatgaaaataagctgaaa 37631578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 45975697 - 45975741
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||| ||||||||  |||||||||||||||||||||| |||||    
T  45975697 tgttttcataagctatcttggagaatttatgaaaataagctgaaa 45975741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 49938754 - 49938798
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| ||| ||||| ||||||||||||| |||||    
T  49938754 tgtttttataagctatattagagaacttatgaaaataagttgaaa 49938798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 51695558 - 51695514
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||| ||||||||  |||||||||||||||||||||| |||||    
T  51695558 tgttttcataagctatcttggagaatttatgaaaataagctgaaa 51695514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35445909 - 35445797
Alignment:
Q  1 aggtgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtct 100  Q
    ||||||| || |||||||  ||||||||||||||||||||||||||||    || | || ||||||| |||||||||||||||||||| ||| | |||||    
T  35445909 aggtgttcttgtaagctatcttggagaatttatgaaaataaggtgaaaatgcctaatgaacatgttataagctgttttcataaattctgtcaaagagtct 35445810  T
Q  101 cacaaaatttatg 113  Q
    ||||||| |||||    
T  35445809 cacaaaacttatg 35445797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 12857765 - 12857724
Alignment:
Q  7 ttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||||||| ||||||||| ||||||||||||| |||||    
T  12857765 ttttataagctatattggagaacttatgaaaataagctgaaa 12857724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 37954693 - 37954737
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||    
T  37954693 tgtttttataagctatattggagaacatatgaaaataagttgaaa 37954737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 42569508 - 42569476
Alignment:
Q  10 tataagctacattggagaatttatgaaaataag 42  Q
    ||||||||| |||||||||||||||||||||||    
T  42569508 tataagctatattggagaatttatgaaaataag 42569476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 27754412 - 27754520
Alignment:
Q  5 gtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtctcaca 104  Q
    ||||| ||||||||  |||||||  ||||||||||||| |||| ||||||||  ||||||| | || |||||||||||| ||||  || |||||||||||    
T  27754412 gttttcataagctattttggagagcttatgaaaataagctgaacgcaacttataatcatgtcataaactgttttcataagttctcccaaatagtctcaca 27754511  T
Q  105 aaatttatg 113  Q
    ||| |||||    
T  27754512 aaacttatg 27754520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 30657835 - 30657798
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataa 41  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  30657835 tgtttttataagctatattggagaacttatgaaaataa 30657798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 4281570 - 4281614
Alignment:
Q  21 ttggagaatttatgaaaataaggtgaaagcaacttacgatcatgt 65  Q
    |||||||||||||||||||||| ||||| ||||||| || |||||    
T  4281570 ttggagaatttatgaaaataagatgaaaacaacttatgaacatgt 4281614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 10758254 - 10758210
Alignment:
Q  69 aagctgttttcataaattctttcatatagtctcacaaaatttatg 113  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||    
T  10758254 aagctgttttcataaattctatcaaacagtctcacaaaacttatg 10758210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 12313229 - 12313152
Alignment:
Q  11 ataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattct 88  Q
    ||||||||  |||||||  ||||||||||||||||||| ||||||| || ||||  | ||||||||||||||||||||    
T  12313229 ataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttttcataaattct 12313152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 43279592 - 43279478
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatca-tgttaaaagctgttttcataaattcttt--catatagtct 100  Q
    ||||||||||||||| ||||||||| || |||||||||| |||||  | |||| ||  | ||| | |||||||||||||||||||| |  || | |||||    
T  43279592 tgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattctctcccaaacagtct 43279493  T
Q  101 cacaaaatttatgct 115  Q
    ||||||| |||||||    
T  43279492 cacaaaacttatgct 43279478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 9878002 - 9877949
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttac 57  Q
    |||||| | |||||||||| ||||| ||||||||||||| ||||| ||||||||    
T  9878002 tgttttaaaaagctacattagagaacttatgaaaataagttgaaaacaacttac 9877949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 20952362 - 20952406
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  20952362 tgtttttattagctatattggagaacttatgaaaataagttgaaa 20952406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 26202035 - 26202079
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||||||| || ||||||||| ||||||||||||| |||||    
T  26202035 tgtttttataagatatattggagaacttatgaaaataagttgaaa 26202079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 40279414 - 40279458
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||| |||||||| ||||||||| ||||||||||||| |||||    
T  40279414 tgttttcataagctatattggagaacttatgaaaataagttgaaa 40279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 19022648 - 19022563
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatca-tgttaaaagctgttttcataaattct 88  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||  ||||||| ||  | ||| | ||| ||||||||||||||||    
T  19022648 tgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttgttttcataaattct 19022563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 7244687 - 7244748
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgt 65  Q
    |||||| |||||||| ||||||||  ||||||||||||| ||||| ||||||| || |||||    
T  7244687 tgttttcataagctatattggagagcttatgaaaataagctgaaaacaacttatgagcatgt 7244748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 27863722 - 27863677
Alignment:
Q  69 aagctgttttcataaattctttcatatagtctcacaaaatttatgc 114  Q
    ||||||||||||||| |||| ||| |||||||||||||| ||||||    
T  27863722 aagctgttttcataagttctctcaaatagtctcacaaaacttatgc 27863677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 43250756 - 43250683
Alignment:
Q  10 tataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataa 83  Q
    |||||||||  |||||||  ||||||| ||||  ||||| |||||||||| ||||| | |||||||||||||||    
T  43250756 tataagctattttggagagcttatgaatataaactgaaaacaacttacgaacatgtcataagctgttttcataa 43250683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11619221 - 11619177
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||||||||||| |||||||| |||||||| |||| |||||    
T  11619221 tgtttttataagctacgttggagaacttatgaaattaagttgaaa 11619177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 27288014 - 27288058
Alignment:
Q  63 tgttaaaagctgttttcataaattctttcatatagtctcacaaaa 107  Q
    ||||| ||||||||||||||| ||||| || ||||||||||||||    
T  27288014 tgttataagctgttttcataagttcttccaaatagtctcacaaaa 27288058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 46280335 - 46280299
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaata 40  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  46280335 tgtttttataagctatattggagaacttatgaaaata 46280299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 31624097 - 31624182
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctt 89  Q
    |||||| ||| ||||  |||||||| ||||||||||||| ||||| || |||| || ||||| | ||||||||||||||| |||||    
T  31624097 tgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 6536622 - 6536666
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||    
T  6536622 tgtttttagaagctatattggagaatttatgaaaataagttgaaa 6536666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 20368243 - 20368134
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtctcac 103  Q
    |||||| |||||||   |||||||| ||||||||||||| |||||  | |||| || ||||| | ||| ||||||||||| ||||  || ||||||| ||    
T  20368243 tgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaatagtcttac 20368144  T
Q  104 aaaatttatg 113  Q
    |||| |||||    
T  20368143 aaaacttatg 20368134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 30536520 - 30536561
Alignment:
Q  7 ttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||| ||||| ||||||||||||||||||||||| |||||    
T  30536520 ttttattagctatattggagaatttatgaaaataagttgaaa 30536561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 21731719 - 21731675
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||    
T  21731719 tgtttttataagctatattggagaatttatgaaagtaagttgaaa 21731675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 29388622 - 29388665
Alignment:
Q  5 gtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    |||||||||||||| | ||||||||||||||||||||| |||||    
T  29388622 gtttttataagctatactggagaatttatgaaaataagttgaaa 29388665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 437307 - 437269
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataag 42  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  437307 tgtttttataaactatattggagaatttatgaaaataag 437269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 2244064 - 2244102
Alignment:
Q  10 tataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  2244064 tataagctatattggagaacttatgaaaataaggtgaaa 2244102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 28300336 - 28300278
Alignment:
Q  30 ttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattct 88  Q
    ||||||||||||| ||||| ||||||| || ||||| | | ||||||||||||||||||    
T  28300336 ttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattct 28300278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 9760447 - 9760484
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataa 41  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  9760447 tgtttttataagctatattggagaacttatgaaaataa 9760484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 901931 - 901975
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  901931 tgtttttataagctatattggagaacttatgaaaataagttgaaa 901975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 39980736 - 39980780
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  39980736 tgtttttataagctatattggagaacttatgaaaataagttgaaa 39980780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 47132338 - 47132382
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  47132338 tgtttttataagctatattggagaagttatgaaaataagttgaaa 47132382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 39602273 - 39602170
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatcatgttaaaagctgttttcataaattctttcatatagtctcac 103  Q
    |||||| ||||||||  || ||||| ||||||||||||| ||||| ||| ||| || ||||| | ||||||| |||||||  |||| || |||| |||||    
T  39602273 tgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaatagcctcac 39602174  T
Q  104 aaaa 107  Q
    ||||    
T  39602173 aaaa 39602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 21367674 - 21367787
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaagcaacttacgatc-atgttaaaagctgttttcataaattctttcatatagtctca 102  Q
    |||||| ||||||||  |||||||| ||||||||||||| ||||| || |||  || | |||| | ||||||||||||||| ||||  || | |||| ||    
T  21367674 tgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctcccaaacagtccca 21367773  T
Q  103 caaaatttatgctg 116  Q
    ||||| ||||||||    
T  21367774 caaaacttatgctg 21367787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 30443900 - 30443944
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||| ||| ||||||||| ||||||||||||| |||||    
T  30443900 tgtttttataaactatattggagaacttatgaaaataagctgaaa 30443944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 35696245 - 35696289
Alignment:
Q  4 tgtttttataagctacattggagaatttatgaaaataaggtgaaa 48  Q
    ||||||||||||||| ||||||||| || |||||||||| |||||    
T  35696245 tgtttttataagctatattggagaacttgtgaaaataagttgaaa 35696289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University