View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_39 (Length: 237)
Name: NF17123_high_39
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 10234554 - 10234759
Alignment:
| Q |
16 |
tttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcagcaat |
115 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234554 |
tttcataaacaaaagtaaaaccaatcagtgaccagaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcagcaat |
10234653 |
T |
|
| Q |
116 |
tccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtgatagcagcaatgaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234654 |
tccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtgatagcagcaatgaact |
10234753 |
T |
|
| Q |
216 |
ctttag |
221 |
Q |
| |
|
|||||| |
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| T |
10234754 |
ctttag |
10234759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 8337276 - 8337481
Alignment:
| Q |
16 |
tttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcagcaat |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8337276 |
tttcataaacaaaagtaaaaccaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatgtcccataccttagcatcaacaatcagcaat |
8337375 |
T |
|
| Q |
116 |
tccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtgatagcagcaatgaact |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
8337376 |
tccaaatgttcttttccatccttcactgctgtccatttatctttgactcgaactgacagcttccacaaatcttttttatctgtgacagcagcaatgaact |
8337475 |
T |
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| Q |
216 |
ctttag |
221 |
Q |
| |
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|||||| |
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| T |
8337476 |
ctttag |
8337481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 28729082 - 28729012
Alignment:
| Q |
92 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgac |
162 |
Q |
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|||||| |||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| ||||| |
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| T |
28729082 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatccttgac |
28729012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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