View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_40 (Length: 237)
Name: NF17123_high_40
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14443451 - 14443231
Alignment:
| Q |
1 |
atacgctaatcatgataagtacttatgctataagcttcaaattaagtttcttatctaaacagagccaatataaattgtgttcctaattgtcaaaccattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
14443451 |
atacgctaatcatgataagtacttatgctataagcttcaaattaagtttcttatctaaacagagccaacataaattgtgttcctaattgtcaaaccgttc |
14443352 |
T |
|
| Q |
101 |
cctcatttccatcagatattcaattctacaattcgtataaaaggaaaagtaaaaactagctctataaagctttgtagcacccacatttctgattgaagac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14443351 |
cctcatttccatcagatattcaattctacaattcgtataaaaggaaaagtaaaaactagctctataaagctttgtagcacccacatttctgatcgaagac |
14443252 |
T |
|
| Q |
201 |
cgcatatctagtgtccgacac |
221 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
14443251 |
cgcatatctagtgtctgacac |
14443231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 48064244 - 48064189
Alignment:
| Q |
6 |
ctaatcatgataagtacttatgctataagcttcaaattaagtttcttatctaaaca |
61 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
48064244 |
ctaatcatgataagggcttatgctataagctgcaaattaagttgtttatccaaaca |
48064189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 30291193 - 30291136
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtttcttatctaaacagagcc |
66 |
Q |
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| T |
30291193 |
atcatgataagtgtttatgctataagctgcaaattaagttggttatccaaacagagcc |
30291136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 10772016 - 10772055
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtt |
48 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
10772016 |
atcatgataagcacttatgctataagctgcaaattaagtt |
10772055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 17883998 - 17883941
Alignment:
| Q |
11 |
catgataagtacttatgctataagcttcaaattaagtttcttatctaaacagagccaa |
68 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||| |
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|
| T |
17883998 |
catgataagtccttatgctataagctaaaaattaagttgtttatcgaaacagagccaa |
17883941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 50298463 - 50298411
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtttcttatctaaaca |
61 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
50298463 |
atcatgataagtgtttatgctataagcttcaaattaagttgtttatccaaaca |
50298411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 46401192 - 46401135
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtttcttatctaaacagagcc |
66 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||| || | |||||| |||||||||| |
|
|
| T |
46401192 |
atcatgataagtgcttatactataagctgcaaatttagctacttatccaaacagagcc |
46401135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 7612391 - 7612352
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtt |
48 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
7612391 |
atcatgataagtgcttatgctataagctgcaaattaagtt |
7612352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 37138288 - 37138241
Alignment:
| Q |
15 |
ataagtacttatgctataagcttcaaattaagtttcttatctaaacag |
62 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
37138288 |
ataagcacttatgctataagcttcaaattaagttgtttatccaaacag |
37138241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 46886831 - 46886868
Alignment:
| Q |
5 |
gctaatcatgataagtacttatgctataagcttcaaat |
42 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
46886831 |
gctaatcatgataagcacttatgctataagctgcaaat |
46886868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 5435764 - 5435712
Alignment:
| Q |
9 |
atcatgataagtacttatgctataagcttcaaattaagtttcttatctaaaca |
61 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| | |||| ||||| |
|
|
| T |
5435764 |
atcatgataagcacttatgctataagctgtaaattaagttgcctatccaaaca |
5435712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 21920004 - 21919954
Alignment:
| Q |
12 |
atgataagtacttatgctataagcttcaaattaagtttcttatctaaacag |
62 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
21920004 |
atgataagtacttatgctataagcgcttaattaagtttcttatccaaacag |
21919954 |
T |
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