View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_high_42 (Length: 232)
Name: NF17123_high_42
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 18697671 - 18697488
Alignment:
| Q |
17 |
caaaggatctgtagggaaaaataatggaaagagactacgaagaaactcagattttacttcaggaagcaaagaagctttttaagagacaaatggagaagat |
116 |
Q |
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| T |
18697671 |
caaaggatctgtagggaaa--taacggaaagagactacaaacaaactcaggtttcacttcaggaagcaaagaagccttttaagagacaaatggagaagat |
18697574 |
T |
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| Q |
117 |
actgaaaaaattaattaaaaccattgattttttggaaagagcaaagagaggaaagtctgcaccgcttatcggcgcagcatatcaac |
202 |
Q |
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| T |
18697573 |
actgaaaaaattaattaaaaccattgattttttggaaagagcaaagagaggaaagtctgctccgcttatcgaagcagcatatcaac |
18697488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 33946161 - 33946063
Alignment:
| Q |
104 |
aaatggagaagatactgaaaaaattaattaaaaccattgattttttggaaagagcaaagagaggaaagtctgcaccgcttatcggcgcagcatatcaac |
202 |
Q |
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|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||| | ||||||| ||||| |||| || |||||||||| |
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| T |
33946161 |
aaatggagaagaaactgaaaaaattaagtaaaaccatggattttttggaaagagctaagagagaagagtctgctccgctaatcgaagcggcatatcaac |
33946063 |
T |
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