View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17123_low_1 (Length: 731)
Name: NF17123_low_1
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 42256650 - 42256095
Alignment:
| Q |
20 |
attttacaacaatcttaaggatttatct---aatgaaatttgtttgtgccctaattctcagatacaacttcgcggttgttttgatcaaagtacacaaact |
116 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42256650 |
atttttcaacaatcttaaggatttatcttctaatgaaatttgtttgtgccctaattctcagatacaacttcgcggttgttttgatcaaagtacacaaact |
42256551 |
T |
|
| Q |
117 |
aaattagatggctgtagagtaccaattacgatgtcaaaggaaatgcagaaacgcaactatagttaatgtcttgaagtggcgtgatcaatttgaggctaaa |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
42256550 |
aaattagatggctttagagtaccaattacgatgtcaaaggaaatgcaggaacgcaactatatttaatgtcttgaagtggcgtgatcaatttgaggctaaa |
42256451 |
T |
|
| Q |
217 |
tttgatcagcagctattttgagccaaggaaaggttcaggttactattttcatcatttaagctccggtttatattatactatcatacaattacttttagtt |
316 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||||| ||||||||| ||||||||| |||||||||||||| |||| ||||||||||||| ||| |
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|
| T |
42256450 |
tttgatcagtagctattttgagccaaggaaaagtccaggttattattttcatgatttaagcttcggtttatattatattatcgtacaattacttttggtt |
42256351 |
T |
|
| Q |
317 |
gttgtttatcttcacatgctggttggagtcatcaaatatagaatattaattacattattcttgtgat--------------attgagctagacgaatata |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
42256350 |
gttgtttatcttcacatgctggttggagtcatcaaatatataatattaattacatgattcttgtgatattggcttatttgaattgagctagacgaatata |
42256251 |
T |
|
| Q |
403 |
agggaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgtggattatcattatttgaaagaaatattatggtctat |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
42256250 |
agggaatttgagaaattagtagcatcttaaagaactttaaaatggtagatt-attcatctttgtggattatcattatttgaaagaaatattgtggtcttt |
42256152 |
T |
|
| Q |
503 |
attctcactttgtggactaattgatcattgttgtttgtgcttgcaataggtgtaaat |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42256151 |
attctcactttgtggactaattgatcattgttgtttgtgcttgcaatatgtgtaaat |
42256095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 19935070 - 19934510
Alignment:
| Q |
20 |
attttacaacaatcttaaggatttatct---aatgaaatttgtttgtgccctaattctcagatacaacttcgcggttgttttgatcaaagtacacaaact |
116 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19935070 |
atttttcaacaatcttaaagatttatcttctaatgaaatttgtttgtgccctaattataagatacaacttcgcggttgttttgatcaaagtacacaaact |
19934971 |
T |
|
| Q |
117 |
aaattagatggctgtagagtaccaattacgatgtcaaaggaaatgcagaaacgcaactatagttaa-tgtcttgaagtggcgtgatcaatttgaggctaa |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
19934970 |
aaattagatggctttagagtaccaattacgatgtcaaaggaaatgcaggaacgcaactatagttaaatgtcttgaagtggcgtgatcaatttgaggataa |
19934871 |
T |
|
| Q |
216 |
atttgatcagcagctattttgagccaaggaaaggttcaggttactattttcatcatttaagctccggtttatattatactatcatacaattacttttagt |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| || |
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|
| T |
19934870 |
atttgatcagtagctattttgagccaaggaaaagtccaggttactattttcatcatttaacctccggtttatattatattatcgtacaattacttttggt |
19934771 |
T |
|
| Q |
316 |
tgttgtttatcttcacatgctggttggagtcatcaaatatagaat---attaattacattattcttgtgat--------------attgagctagacgaa |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
19934770 |
tgttgtttatcttcacatgctggttggagtcatcaaatatagaatattattaattacatgattcttgtgatattggcttatttgaattgagctagacgaa |
19934671 |
T |
|
| Q |
399 |
tataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgtggattatcattatttgaaagaaatattatggt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
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|
| T |
19934670 |
tataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattgatctttgtggattatcattatttgaaagaaatattgttgt |
19934571 |
T |
|
| Q |
499 |
ctatattctcactttgtggactaattgatcattgttgtttgtgcttgcaataggtgtaaat |
559 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
19934570 |
ctttattctcattttgtggactaattgatcattgttttttgtgcttgcaatatgtgtaaat |
19934510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 551 - 717
Target Start/End: Complemental strand, 42255958 - 42255788
Alignment:
| Q |
551 |
ggtgtaaatttttattgtgagatttagaactaattaaggtgat---tagtctcttgcttatggaggagatataaaactcaattctaat-agctgtatgtg |
646 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
42255958 |
ggtgtaaatttttattgtgagatttagaaataattaaggtgataattagtctcttgcttatggaggagatataaaactcaattctaattagttgtatgtg |
42255859 |
T |
|
| Q |
647 |
ctttgaggttcaattctaattagttgtatatattgcttgagttttaaagtatgtatattaaagcctctctg |
717 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42255858 |
ctttgaggttcaattctaattagctgtatatattgcttgagttttaaagtatgtatattaaagcctctctg |
42255788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 554 - 717
Target Start/End: Complemental strand, 19934368 - 19934209
Alignment:
| Q |
554 |
gtaaatttttattgtgagatttagaactaattaaggtgattagtctcttgcttatggaggagatataaaactcaattctaa-tagctgtatgtgctttga |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |
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|
| T |
19934368 |
gtaaatttttattgtgagatttagaactaattaaggtgattagtctcttgcttatggaggagatataaaactcaattctaattagttgtatg-----tga |
19934274 |
T |
|
| Q |
653 |
ggttcaattctaattagttgtatatattgcttgagttttaaagtatgtatattaaagcctctctg |
717 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19934273 |
ggttcaattctaattagctgtatatattgcttgagttttaaagtatgtatattaaagcttctctg |
19934209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 24 - 559
Target Start/End: Complemental strand, 6671207 - 6670663
Alignment:
| Q |
24 |
tacaacaatcttaaggattt-atct--aatgaaatttgtttgtgccctaattctcagatacaacttcgcggttgttttgatcaaagtacacaaactaaat |
120 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6671207 |
tacaacaatcttgaggattttatctcgaatggaatttgtttgtgccctaattctcagatacaacttcgcggttgttttgatcaaagtacacaaactaaat |
6671108 |
T |
|
| Q |
121 |
tagatggctgtagagtaccaattacgatgtcaaaggaaatgcagaaacgcaactatagttaatgtcttgaagtggcgtgatcaatttgaggctaaatttg |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
6671107 |
tagatggctttagagtaccaattacgatgtcaaaggaattgcaggaacgcaactatagttaatgtcttgaagtggcatgatcaatttgaggctaaatatt |
6671008 |
T |
|
| Q |
221 |
atcagcagctattttgagccaaggaaaggttcaggttactattttcatcatttaagctccggtttatattatactatcatacaattacttttagttgttg |
320 |
Q |
| |
|
|| || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
6671007 |
attagtagctattttgagccaaggaaaagtccaggttactattttcatcatttaagctccggtttatattatattatcgtacaattacttttggttgttg |
6670908 |
T |
|
| Q |
321 |
tttatcttcacatgctggttggagtcatcaaatatagaatattaattacattattcttgtgat--------------attgagctagacgaatataaggg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6670907 |
tttatcttcacatgctggttggagtcatcaaatatagaatattaattacatgattcttgtgatattggcttatttgaattgagctagacgaatataaggg |
6670808 |
T |
|
| Q |
407 |
aatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgtggattatcattatttgaaagaaatattatggtctatattc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6670807 |
aatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatc--------ttatcattatttgaaagaaatattgtggtctttattc |
6670716 |
T |
|
| Q |
507 |
tcactttgtggactaattgatcattgttgtttgtgcttgcaataggtgtaaat |
559 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
6670715 |
tcactttgtagactaacttatcattgttgtttgtgcttgcaatatgtgtaaat |
6670663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 554 - 635
Target Start/End: Complemental strand, 6670628 - 6670547
Alignment:
| Q |
554 |
gtaaatttttattgtgagatttagaactaattaaggtgattagtctcttgcttatggaggagatataaaactcaattctaat |
635 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6670628 |
gtaaatttttattgtgaaatttagaactaattaaggtgattagtctcttgcttatggaggagatataaaactcaattctaat |
6670547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 414 - 545
Target Start/End: Complemental strand, 5695579 - 5695448
Alignment:
| Q |
414 |
gaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgtggattatcattatttgaaagaaatattatggtctatattctcacttt |
513 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||| || | | |||||| |||| |||||||||||| |
|
|
| T |
5695579 |
gaaattagtagcatcttaaagaacttcaaattggtagattaattcatctttgtggattattgttgtttcaatgtattattatagtctttattctcacttt |
5695480 |
T |
|
| Q |
514 |
gtggactaattgatcattgttgtttgtgcttg |
545 |
Q |
| |
|
||||| |||||||||||| || || ||||||| |
|
|
| T |
5695479 |
gtggattaattgatcatttttattggtgcttg |
5695448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 6663686 - 6663656
Alignment:
| Q |
16 |
aaatattttacaacaatcttaaggatttatc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6663686 |
aaatattttacaacaatcttaaggatttatc |
6663656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 714
Target Start/End: Complemental strand, 6670498 - 6670456
Alignment:
| Q |
673 |
tatatattgctt-gagttttaaagtatgtatattaaagcctct |
714 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6670498 |
tatatattgctttgagttttaaagtatgtatatcaaagcctct |
6670456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 25641316 - 25641284
Alignment:
| Q |
16 |
aaatattttacaacaatcttaaggatttatcta |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25641316 |
aaatattttacaacaatcttaaggatttatcta |
25641284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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