View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_10 (Length: 447)
Name: NF17123_low_10
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 19914885 - 19914640
Alignment:
| Q |
16 |
tataaataaatagagtggtaatgcaagttaaataagaatgtagaatgtaataacttttcttaaggaaaagccagcatcttctttaccttcactggtgtta |
115 |
Q |
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| T |
19914885 |
tataaataaatagagtggtaatgcaagttaaataggaatgtagaatgtaataacttttcttatggaaaagccagcatcttctttaccttt-ctggtgtta |
19914787 |
T |
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| Q |
116 |
aaattaattgatgtgtaaagcaagagaaactttaaaagagagaaaataaagtgactatcactatacctcatacataatcccatatagattgtaaaacaaa |
215 |
Q |
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| T |
19914786 |
aattaatttgttgtgtaaagcaagagaaactttaaaagaaagaaaatgaagtgactaaaactatatctaatacataattccatatagattgtgaaacaaa |
19914687 |
T |
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| Q |
216 |
taataatttattgcaatgtactgtggctttaagatgaatattattca |
262 |
Q |
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| T |
19914686 |
aaataattcattacaatgttatgtggctttaagatgaatagtattca |
19914640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 19914275 - 19914187
Alignment:
| Q |
332 |
gagaatagcctaacaagtaaagcaactttagttaatttaaattcaatacgagtgaaaaatcactcttcattcaatcttactaaatgttt |
420 |
Q |
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| T |
19914275 |
gagaatagccttacaagtaaagcaactttagttaatttaaattcaatacgagtgaaaaatcactcttcattcaatcttactaaatgttt |
19914187 |
T |
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