View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_12 (Length: 408)
Name: NF17123_low_12
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_12 |
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| [»] scaffold1183 (1 HSPs) |
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| [»] scaffold1384 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 40588763 - 40588380
Alignment:
| Q |
11 |
cacagagtccactattaggtcctcaatattcaaccactccttcactttctaatgctttggttgcagctttcaaacgtgctcaggctcaccaacgacgtgg |
110 |
Q |
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| T |
40588763 |
cacaaagtccactattaggtcctcaatattcaaccactccttcactttctaatgctttggttgcagctttcaaacgtgctcaggctcaccaacgacgtgg |
40588664 |
T |
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| Q |
111 |
aacgatcgagaatcagcaacagcagcatattcttgctttgaaaattgaagttgaacagctcataatctctatacttgatgatccaagtgttagtagagtt |
210 |
Q |
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| T |
40588663 |
aacgatcgagaatcagcaacagcagcatattcttgctttgaaaattgaagttgaacagctcataatctctatacttgatgatccaagtgttagtagagtt |
40588564 |
T |
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| Q |
211 |
atgagagaagctggtttctctagcactcttgttaaatcaagagttgaagttgaacaagctcttccaattgaagtttcttcaacaaaagtttcttctgaat |
310 |
Q |
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| T |
40588563 |
atgagagaagctggtttctctagcactcttgttaaatcaagagttgaagttgaacaagctcttccaattgaagtttcttcaacaaaagtttcttctgaat |
40588464 |
T |
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| Q |
311 |
atcataaaaaccagtccaaagaacttagccttaagcctcaagttcttagccttggtggttcatacaccaaacctatagattgtg |
394 |
Q |
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| T |
40588463 |
atcataaaaaccagtccaaagaacttagccttaagcctcaagttcttagccttggtggttcatacaccaaacctatagattgtg |
40588380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 52806736 - 52806652
Alignment:
| Q |
161 |
ttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctagcactcttgttaa |
245 |
Q |
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| T |
52806736 |
ttgaacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaa |
52806652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 53818088 - 53818262
Alignment:
| Q |
56 |
tttctaatgctttggttgcagctttcaaacgtgctcaggctcaccaacgacgtggaacgatcgagaatcagcaacagcagcatattcttgctttgaaaat |
155 |
Q |
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| T |
53818088 |
tttcaaatgctttgatggcagctttgaaacgtgctcaagctcatcaacgtcgtggtt--atcctgaa-cagcaacaacaaccgcttcttgctgtcaaagt |
53818184 |
T |
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| Q |
156 |
tgaagttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctag |
233 |
Q |
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| T |
53818185 |
tgaattggaacaactcatcatatcaattcttgatgatcctagtgttagtagggtcatgagagaagctagtttttctag |
53818262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 913 - 1004
Alignment:
| Q |
155 |
ttgaagttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctagcactcttgttaaa |
246 |
Q |
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| T |
913 |
ttgaggttgaacatttaataatctctattcttaatgacccttgtattagtagagttatgagagaagctggtttctcgagtacacttgttaaa |
1004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 767 - 681
Alignment:
| Q |
160 |
gttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctagcactcttgttaaa |
246 |
Q |
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| T |
767 |
gttgaacaactaataatatctattcctgatgacccttgtattagtagagttatgagagaagctggtttctctggtacacttgttaaa |
681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 16611491 - 16611526
Alignment:
| Q |
198 |
tgttagtagagttatgagagaagctggtttctctag |
233 |
Q |
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| T |
16611491 |
tgttagtagagttatgagagaagctggtttttctag |
16611526 |
T |
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