View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_13 (Length: 400)
Name: NF17123_low_13
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 55028600 - 55028216
Alignment:
| Q |
1 |
accaccaccactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatcagtc |
100 |
Q |
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| T |
55028600 |
accaccaccactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatcagtc |
55028501 |
T |
|
| Q |
101 |
tgttgaccagaattaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcctctt |
200 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028500 |
tgtgacccagaataaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcctctt |
55028401 |
T |
|
| Q |
201 |
cacgagccgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcctccga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028400 |
cacgaggcgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcctccga |
55028301 |
T |
|
| Q |
301 |
tgatgaccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaagaagctgaagaggatgaggatgaagat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55028300 |
tgatgaccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaggaagctgaagaggatgaggatgaagat |
55028216 |
T |
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