View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_14 (Length: 392)
Name: NF17123_low_14
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 12547165 - 12546804
Alignment:
| Q |
13 |
aatatgccataaacattgaattaatccattacatttgaataatttactgtttacttgatgattacggttatatagtataaggatgtcattttatgtgatg |
112 |
Q |
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| T |
12547165 |
aatatgccataaacattgaattaatccattacatttgaataatttactgtttacttgatgattacggttatatagtataaggatgtcattttatgtgatg |
12547066 |
T |
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| Q |
113 |
tcttgtcgtaaactatataattagacattcgagtgccataacatgcgcaaacattgacttcttccggttcnnnnnnnnnnnnnnnctttccgtttaacca |
212 |
Q |
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| T |
12547065 |
tcttgtcgtaaactatataattagacattcgagtgccataacatgcgcaaacattgacttcttccggtt----------ttttgttttttttgttaacca |
12546976 |
T |
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| Q |
213 |
tcaaattttcaaatgaaaaggatatgctaatttgaacttcgatcggaagataattaaaactcattaaacacttggatctaactacttaaacaatttgtta |
312 |
Q |
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| T |
12546975 |
tcaaattttcaaaggaaaaggatatgctaatttgaacttcgatcggaagataattaaaactcattaaacacttggatctaactacttaaacaatttgtta |
12546876 |
T |
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| Q |
313 |
ttcgattttgattctt-----------gtggattcgaagacaacaacaagagttgtcaagatacgatggagg |
373 |
Q |
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| T |
12546875 |
tttgattttgattcttggttattcgtagtggattcaaagaagacaaaaagagttgtcaagatacgatggagg |
12546804 |
T |
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