View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17123_low_15 (Length: 389)
Name: NF17123_low_15
Description: NF17123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17123_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 29194823 - 29194540
Alignment:
| Q |
15 |
aagattttctcataacgagttgaaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaat |
114 |
Q |
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| T |
29194823 |
aagattttctcataacgagttgaaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaag |
29194724 |
T |
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| Q |
115 |
tcttctcctaagaaaattgctttcaagtcttgtggtaaattctatgttggtgctggaatatggattaagggttatagcaaggaccattggcttggaagtg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29194723 |
tcttctcctaagaaaattgctttcaagtcttgtggtaaattctatgttggtgctggaatatggattaagggttatagcaaggaccattggcttggaagtg |
29194624 |
T |
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| Q |
215 |
gagttaattacatgtgtgatatacttagagacagcttaattaacaaactctacttatcattttgtagtactaattaatttattc |
298 |
Q |
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| T |
29194623 |
gagttaattacatgtgtgatatacttagagacagcttaattaacaaactctacttatcattttgtagtattaattaatttattc |
29194540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 37 - 379
Target Start/End: Original strand, 29203915 - 29204260
Alignment:
| Q |
37 |
aaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaattcttctcctaagaaaattgctt |
136 |
Q |
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| T |
29203915 |
aaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaagtcttctcctaagaaaattgctt |
29204014 |
T |
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| Q |
137 |
tcaagtcttgtggtaaattctatgttggtgctggaatatggattaagggttatagcaaggaccattggcttggaag---tggagttaattacatgtgtga |
233 |
Q |
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| T |
29204015 |
tcaagtcttgtggtaaattctatgttggtgctggaatatggactaagggttatagcaaggaccattggcttggaagatcaggagttaatttccaatgtaa |
29204114 |
T |
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| Q |
234 |
tatacttagagacagcttaattaacaaactctacttatcattttgtagtactaattaatttattccaagtatacaaattttcctgatctgagaatgattg |
333 |
Q |
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||| ||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29204115 |
tattaatagagacagattagttaacaaagtctacttatcattttgtagtactgattaatttatttcaagtatacaaattttcctgatctgagaatgattg |
29204214 |
T |
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| Q |
334 |
ttcgaagcatctacacctacaaaattgtcttatatcaccacctatg |
379 |
Q |
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| T |
29204215 |
ttcgaagcatctacacctacaaaattgtcttatatcaccacctatg |
29204260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 29199221 - 29199418
Alignment:
| Q |
15 |
aagattttctcataacgagttgaaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199221 |
aagattttctcataacgagttgaaatatgttgagtttcgtggttgtgaatgcaaggcatttcaaaatctgttagataaacacctttggggaaatatgaag |
29199320 |
T |
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| Q |
115 |
tcttctcctaagaaaattgctttcaagtcttgtggtaaattctatgttggtgctggaatatggattaagggttatagcaaggaccattggcttggaag |
212 |
Q |
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| T |
29199321 |
tcttctcctaagaaaattgctttcaagtcttgtggtaaattctatgttggtgctggaatatggactaagggttatagcaaggaccattggcttggaag |
29199418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 29196270 - 29196195
Alignment:
| Q |
304 |
atacaaattttcctgatctgagaatgattgttcgaagcatctacacctacaaaattgtcttatatcaccacctatg |
379 |
Q |
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||||| |||||||| ||| ||||||||||||| ||| |||||||||| ||||| |||||| |||||||||||||| |
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| T |
29196270 |
atacacattttccttatcagagaatgattgtttgaaatatctacacctgcaaaactgtcttctatcaccacctatg |
29196195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 35070709 - 35070667
Alignment:
| Q |
19 |
ttttctcataacgagttgaaatatgttgagtttcgtggttgtg |
61 |
Q |
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| T |
35070709 |
ttttctcataacgatttgaaatatgttgaatttcgtggttgtg |
35070667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 35096745 - 35096703
Alignment:
| Q |
19 |
ttttctcataacgagttgaaatatgttgagtttcgtggttgtg |
61 |
Q |
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|||||||||||||| |||||||||||||| || |||||||||| |
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| T |
35096745 |
ttttctcataacgatttgaaatatgttgaattccgtggttgtg |
35096703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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